Gene : Medtr1g088860 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR11064:SF42 - NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 Description:  nuclear transcription factor Y protein
Genomic Order:  4909 Name:  ? Medtr1g088860
Secondary Identifier:  ? PAC:31100211
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g088860 0.5kb upstream 0.5kb upstream 1471 true chr1: 39785723-39787193 Medicago truncatula
Medtr1g088860 0.5kb upstream 0.5kb upstream 500 false chr1: 39786694-39787193 Medicago truncatula
Medtr1g088860 0.5kb downstream 0.5kb downstream 1471 true chr1: 39785223-39786693 Medicago truncatula
Medtr1g088860 0.5kb downstream 0.5kb downstream 500 false chr1: 39785223-39785722 Medicago truncatula
Medtr1g088860 1.0kb upstream 1.0kb upstream 1971 true chr1: 39785723-39787693 Medicago truncatula
Medtr1g088860 1.0kb upstream 1.0kb upstream 1000 false chr1: 39786694-39787693 Medicago truncatula
Medtr1g088860 1.0kb downstream 1.0kb downstream 1971 true chr1: 39784723-39786693 Medicago truncatula
Medtr1g088860 1.0kb downstream 1.0kb downstream 1000 false chr1: 39784723-39785722 Medicago truncatula
Medtr1g088860 2.0kb upstream 2.0kb upstream 2971 true chr1: 39785723-39788693 Medicago truncatula
Medtr1g088860 2.0kb upstream 2.0kb upstream 2000 false chr1: 39786694-39788693 Medicago truncatula
Medtr1g088860 2.0kb downstream 2.0kb downstream 2971 true chr1: 39783723-39786693 Medicago truncatula
Medtr1g088860 2.0kb downstream 2.0kb downstream 2000 false chr1: 39783723-39785722 Medicago truncatula
Medtr1g088860 5.0kb upstream 5.0kb upstream 5971 true chr1: 39785723-39791693 Medicago truncatula
Medtr1g088860 5.0kb upstream 5.0kb upstream 5000 false chr1: 39786694-39791693 Medicago truncatula
Medtr1g088860 5.0kb downstream 5.0kb downstream 5971 true chr1: 39780723-39786693 Medicago truncatula
Medtr1g088860 5.0kb downstream 5.0kb downstream 5000 false chr1: 39780723-39785722 Medicago truncatula
Medtr1g088860 10.0kb upstream 10.0kb upstream 10971 true chr1: 39785723-39796693 Medicago truncatula
Medtr1g088860 10.0kb upstream 10.0kb upstream 10000 false chr1: 39786694-39796693 Medicago truncatula
Medtr1g088860 10.0kb downstream 10.0kb downstream 10971 true chr1: 39775723-39786693 Medicago truncatula
Medtr1g088860 10.0kb downstream 10.0kb downstream 10000 false chr1: 39775723-39785722 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041139 5273 Angiosperm View MSA
122312390 5265 Fabidae View MSA
124070521 5270 Rosid View MSA
123747842 5271 Pentapetalae View MSA
122796503 5272 Eudicot View MSA
123429094 5275 Viridiplantae View MSA
121350139 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.054     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.367       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.416        
cufflinks 0.576        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.499        

0 Strain