Gene : Medtr1g089810 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR37236:SF1 - AUXIN-BINDING PROTEIN 1 Description:  susceptible endoplasmic reticulum auxin-binding protein
Genomic Order:  4962 Name:  ? Medtr1g089810
Secondary Identifier:  ? PAC:31097308
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g089810 0.5kb upstream 0.5kb upstream 4758 true chr1: 40199904-40204661 Medicago truncatula
Medtr1g089810 0.5kb upstream 0.5kb upstream 500 false chr1: 40199904-40200403 Medicago truncatula
Medtr1g089810 0.5kb downstream 0.5kb downstream 4758 true chr1: 40200404-40205161 Medicago truncatula
Medtr1g089810 0.5kb downstream 0.5kb downstream 500 false chr1: 40204662-40205161 Medicago truncatula
Medtr1g089810 1.0kb upstream 1.0kb upstream 5258 true chr1: 40199404-40204661 Medicago truncatula
Medtr1g089810 1.0kb upstream 1.0kb upstream 1000 false chr1: 40199404-40200403 Medicago truncatula
Medtr1g089810 1.0kb downstream 1.0kb downstream 5258 true chr1: 40200404-40205661 Medicago truncatula
Medtr1g089810 1.0kb downstream 1.0kb downstream 1000 false chr1: 40204662-40205661 Medicago truncatula
Medtr1g089810 2.0kb upstream 2.0kb upstream 6258 true chr1: 40198404-40204661 Medicago truncatula
Medtr1g089810 2.0kb upstream 2.0kb upstream 2000 false chr1: 40198404-40200403 Medicago truncatula
Medtr1g089810 2.0kb downstream 2.0kb downstream 6258 true chr1: 40200404-40206661 Medicago truncatula
Medtr1g089810 2.0kb downstream 2.0kb downstream 2000 false chr1: 40204662-40206661 Medicago truncatula
Medtr1g089810 5.0kb upstream 5.0kb upstream 9258 true chr1: 40195404-40204661 Medicago truncatula
Medtr1g089810 5.0kb upstream 5.0kb upstream 5000 false chr1: 40195404-40200403 Medicago truncatula
Medtr1g089810 5.0kb downstream 5.0kb downstream 9258 true chr1: 40200404-40209661 Medicago truncatula
Medtr1g089810 5.0kb downstream 5.0kb downstream 5000 false chr1: 40204662-40209661 Medicago truncatula
Medtr1g089810 10.0kb upstream 10.0kb upstream 14258 true chr1: 40190404-40204661 Medicago truncatula
Medtr1g089810 10.0kb upstream 10.0kb upstream 10000 false chr1: 40190404-40200403 Medicago truncatula
Medtr1g089810 10.0kb downstream 10.0kb downstream 14258 true chr1: 40200404-40214661 Medicago truncatula
Medtr1g089810 10.0kb downstream 10.0kb downstream 10000 false chr1: 40204662-40214661 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302147 5265 Fabidae View MSA
124068564 5270 Rosid View MSA
123737576 5271 Pentapetalae View MSA
122787976 5272 Eudicot View MSA
122049427 5273 Angiosperm View MSA
121346924 5274 Embryophyte View MSA
123426893 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.379       High
cufflinks 0.858       Low
cufflinks 1.334        
cufflinks 0.919        
cufflinks 1.244        
cufflinks 2.563        
cufflinks 2.887        
cufflinks 0.85       Low
cufflinks 1.9        

0 Strain