Gene : Medtr1g089260 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR19924:SF26 - U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 15 HOMOLOG Description:  U3 small nucleolar RNA-associated protein, putative
Genomic Order:  4936 Name:  ? Medtr1g089260
Secondary Identifier:  ? PAC:31099644
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g089260 0.5kb upstream 0.5kb upstream 2487 true chr1: 40004460-40006946 Medicago truncatula
Medtr1g089260 0.5kb upstream 0.5kb upstream 500 false chr1: 40006447-40006946 Medicago truncatula
Medtr1g089260 0.5kb downstream 0.5kb downstream 2487 true chr1: 40003960-40006446 Medicago truncatula
Medtr1g089260 0.5kb downstream 0.5kb downstream 500 false chr1: 40003960-40004459 Medicago truncatula
Medtr1g089260 1.0kb upstream 1.0kb upstream 2987 true chr1: 40004460-40007446 Medicago truncatula
Medtr1g089260 1.0kb upstream 1.0kb upstream 1000 false chr1: 40006447-40007446 Medicago truncatula
Medtr1g089260 1.0kb downstream 1.0kb downstream 2987 true chr1: 40003460-40006446 Medicago truncatula
Medtr1g089260 1.0kb downstream 1.0kb downstream 1000 false chr1: 40003460-40004459 Medicago truncatula
Medtr1g089260 2.0kb upstream 2.0kb upstream 3987 true chr1: 40004460-40008446 Medicago truncatula
Medtr1g089260 2.0kb upstream 2.0kb upstream 2000 false chr1: 40006447-40008446 Medicago truncatula
Medtr1g089260 2.0kb downstream 2.0kb downstream 3987 true chr1: 40002460-40006446 Medicago truncatula
Medtr1g089260 2.0kb downstream 2.0kb downstream 2000 false chr1: 40002460-40004459 Medicago truncatula
Medtr1g089260 5.0kb upstream 5.0kb upstream 6987 true chr1: 40004460-40011446 Medicago truncatula
Medtr1g089260 5.0kb upstream 5.0kb upstream 5000 false chr1: 40006447-40011446 Medicago truncatula
Medtr1g089260 5.0kb downstream 5.0kb downstream 6987 true chr1: 39999460-40006446 Medicago truncatula
Medtr1g089260 5.0kb downstream 5.0kb downstream 5000 false chr1: 39999460-40004459 Medicago truncatula
Medtr1g089260 10.0kb upstream 10.0kb upstream 11987 true chr1: 40004460-40016446 Medicago truncatula
Medtr1g089260 10.0kb upstream 10.0kb upstream 10000 false chr1: 40006447-40016446 Medicago truncatula
Medtr1g089260 10.0kb downstream 10.0kb downstream 11987 true chr1: 39994460-40006446 Medicago truncatula
Medtr1g089260 10.0kb downstream 10.0kb downstream 10000 false chr1: 39994460-40004459 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041129 5273 Angiosperm View MSA
122305138 5265 Fabidae View MSA
124066406 5270 Rosid View MSA
123738501 5271 Pentapetalae View MSA
122791518 5272 Eudicot View MSA
121344745 5274 Embryophyte View MSA
123424806 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.591        
cufflinks 4.421        
cufflinks 4.734        
cufflinks 6.382        
cufflinks 9.591       High
cufflinks 1.138       Low
cufflinks 2.847        
cufflinks 4.973        
cufflinks 5.506        

0 Strain