Gene : Medtr1g089850 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR16019 - SYNAPSE-ASSOCIATED PROTEIN Description:  synapse-associated protein, putative
Genomic Order:  4965 Name:  ? Medtr1g089850
Secondary Identifier:  ? PAC:31093493
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g089850 0.5kb upstream 0.5kb upstream 2263 true chr1: 40216482-40218744 Medicago truncatula
Medtr1g089850 0.5kb upstream 0.5kb upstream 500 false chr1: 40216482-40216981 Medicago truncatula
Medtr1g089850 0.5kb downstream 0.5kb downstream 2263 true chr1: 40216982-40219244 Medicago truncatula
Medtr1g089850 0.5kb downstream 0.5kb downstream 500 false chr1: 40218745-40219244 Medicago truncatula
Medtr1g089850 1.0kb upstream 1.0kb upstream 2763 true chr1: 40215982-40218744 Medicago truncatula
Medtr1g089850 1.0kb upstream 1.0kb upstream 1000 false chr1: 40215982-40216981 Medicago truncatula
Medtr1g089850 1.0kb downstream 1.0kb downstream 2763 true chr1: 40216982-40219744 Medicago truncatula
Medtr1g089850 1.0kb downstream 1.0kb downstream 1000 false chr1: 40218745-40219744 Medicago truncatula
Medtr1g089850 2.0kb upstream 2.0kb upstream 3763 true chr1: 40214982-40218744 Medicago truncatula
Medtr1g089850 2.0kb upstream 2.0kb upstream 2000 false chr1: 40214982-40216981 Medicago truncatula
Medtr1g089850 2.0kb downstream 2.0kb downstream 3763 true chr1: 40216982-40220744 Medicago truncatula
Medtr1g089850 2.0kb downstream 2.0kb downstream 2000 false chr1: 40218745-40220744 Medicago truncatula
Medtr1g089850 5.0kb upstream 5.0kb upstream 6763 true chr1: 40211982-40218744 Medicago truncatula
Medtr1g089850 5.0kb upstream 5.0kb upstream 5000 false chr1: 40211982-40216981 Medicago truncatula
Medtr1g089850 5.0kb downstream 5.0kb downstream 6763 true chr1: 40216982-40223744 Medicago truncatula
Medtr1g089850 5.0kb downstream 5.0kb downstream 5000 false chr1: 40218745-40223744 Medicago truncatula
Medtr1g089850 10.0kb upstream 10.0kb upstream 11763 true chr1: 40206982-40218744 Medicago truncatula
Medtr1g089850 10.0kb upstream 10.0kb upstream 10000 false chr1: 40206982-40216981 Medicago truncatula
Medtr1g089850 10.0kb downstream 10.0kb downstream 11763 true chr1: 40216982-40228744 Medicago truncatula
Medtr1g089850 10.0kb downstream 10.0kb downstream 10000 false chr1: 40218745-40228744 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301905 5265 Fabidae View MSA
124071131 5270 Rosid View MSA
123740161 5271 Pentapetalae View MSA
122791095 5272 Eudicot View MSA
122047719 5273 Angiosperm View MSA
121347355 5274 Embryophyte View MSA
123428249 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.842        
cufflinks 23.353     High High
cufflinks 19.771     High  
cufflinks 8.209        
cufflinks 28.423     High High
cufflinks 5.586       Low
cufflinks 13.392     High  
cufflinks 16.713     High  
cufflinks 13.04     High  

0 Strain