Gene : Medtr1g090803 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR10044:SF127 - RING/U-BOX DOMAIN-CONTAINING PROTEIN Description:  RING/U-box protein
Genomic Order:  5064 Name:  ? Medtr1g090803
Secondary Identifier:  ? PAC:31099750
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-7511 Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g090803 0.5kb upstream 0.5kb upstream 7005 true chr1: 40822023-40829027 Medicago truncatula
Medtr1g090803 0.5kb upstream 0.5kb upstream 500 false chr1: 40822023-40822522 Medicago truncatula
Medtr1g090803 0.5kb downstream 0.5kb downstream 7005 true chr1: 40822523-40829527 Medicago truncatula
Medtr1g090803 0.5kb downstream 0.5kb downstream 500 false chr1: 40829028-40829527 Medicago truncatula
Medtr1g090803 1.0kb upstream 1.0kb upstream 7505 true chr1: 40821523-40829027 Medicago truncatula
Medtr1g090803 1.0kb upstream 1.0kb upstream 1000 false chr1: 40821523-40822522 Medicago truncatula
Medtr1g090803 1.0kb downstream 1.0kb downstream 7505 true chr1: 40822523-40830027 Medicago truncatula
Medtr1g090803 1.0kb downstream 1.0kb downstream 1000 false chr1: 40829028-40830027 Medicago truncatula
Medtr1g090803 2.0kb upstream 2.0kb upstream 8505 true chr1: 40820523-40829027 Medicago truncatula
Medtr1g090803 2.0kb upstream 2.0kb upstream 2000 false chr1: 40820523-40822522 Medicago truncatula
Medtr1g090803 2.0kb downstream 2.0kb downstream 8505 true chr1: 40822523-40831027 Medicago truncatula
Medtr1g090803 2.0kb downstream 2.0kb downstream 2000 false chr1: 40829028-40831027 Medicago truncatula
Medtr1g090803 5.0kb upstream 5.0kb upstream 11505 true chr1: 40817523-40829027 Medicago truncatula
Medtr1g090803 5.0kb upstream 5.0kb upstream 5000 false chr1: 40817523-40822522 Medicago truncatula
Medtr1g090803 5.0kb downstream 5.0kb downstream 11505 true chr1: 40822523-40834027 Medicago truncatula
Medtr1g090803 5.0kb downstream 5.0kb downstream 5000 false chr1: 40829028-40834027 Medicago truncatula
Medtr1g090803 10.0kb upstream 10.0kb upstream 16505 true chr1: 40812523-40829027 Medicago truncatula
Medtr1g090803 10.0kb upstream 10.0kb upstream 10000 false chr1: 40812523-40822522 Medicago truncatula
Medtr1g090803 10.0kb downstream 10.0kb downstream 16505 true chr1: 40822523-40839027 Medicago truncatula
Medtr1g090803 10.0kb downstream 10.0kb downstream 10000 false chr1: 40829028-40839027 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301947 5265 Fabidae View MSA
124065463 5270 Rosid View MSA
123737422 5271 Pentapetalae View MSA
122787073 5272 Eudicot View MSA
122041881 5273 Angiosperm View MSA
121350906 5274 Embryophyte View MSA
123381933 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.003       High
cufflinks 3.077        
cufflinks 3.754        
cufflinks 3.054        
cufflinks 3.303        
cufflinks 1.945       Low
cufflinks 4.605        
cufflinks 2.827        
cufflinks 4.722       High

0 Strain