Gene : Medtr2g015920 M. truncatula Mt4.0v1
Defline:  (1 of 3) KOG1542//KOG1543 - Cysteine proteinase Cathepsin F // Cysteine proteinase Cathepsin L Description:  papain family cysteine protease
Genomic Order:  716 Name:  ? Medtr2g015920
Secondary Identifier:  ? PAC:31063998
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g015920 0.5kb upstream 0.5kb upstream 2215 true chr2: 4780597-4782811 Medicago truncatula
Medtr2g015920 0.5kb upstream 0.5kb upstream 500 false chr2: 4780597-4781096 Medicago truncatula
Medtr2g015920 0.5kb downstream 0.5kb downstream 2215 true chr2: 4781097-4783311 Medicago truncatula
Medtr2g015920 0.5kb downstream 0.5kb downstream 500 false chr2: 4782812-4783311 Medicago truncatula
Medtr2g015920 1.0kb upstream 1.0kb upstream 2715 true chr2: 4780097-4782811 Medicago truncatula
Medtr2g015920 1.0kb upstream 1.0kb upstream 1000 false chr2: 4780097-4781096 Medicago truncatula
Medtr2g015920 1.0kb downstream 1.0kb downstream 2715 true chr2: 4781097-4783811 Medicago truncatula
Medtr2g015920 1.0kb downstream 1.0kb downstream 1000 false chr2: 4782812-4783811 Medicago truncatula
Medtr2g015920 2.0kb upstream 2.0kb upstream 3715 true chr2: 4779097-4782811 Medicago truncatula
Medtr2g015920 2.0kb upstream 2.0kb upstream 2000 false chr2: 4779097-4781096 Medicago truncatula
Medtr2g015920 2.0kb downstream 2.0kb downstream 3715 true chr2: 4781097-4784811 Medicago truncatula
Medtr2g015920 2.0kb downstream 2.0kb downstream 2000 false chr2: 4782812-4784811 Medicago truncatula
Medtr2g015920 5.0kb upstream 5.0kb upstream 6715 true chr2: 4776097-4782811 Medicago truncatula
Medtr2g015920 5.0kb upstream 5.0kb upstream 5000 false chr2: 4776097-4781096 Medicago truncatula
Medtr2g015920 5.0kb downstream 5.0kb downstream 6715 true chr2: 4781097-4787811 Medicago truncatula
Medtr2g015920 5.0kb downstream 5.0kb downstream 5000 false chr2: 4782812-4787811 Medicago truncatula
Medtr2g015920 10.0kb upstream 10.0kb upstream 11715 true chr2: 4771097-4782811 Medicago truncatula
Medtr2g015920 10.0kb upstream 10.0kb upstream 10000 false chr2: 4771097-4781096 Medicago truncatula
Medtr2g015920 10.0kb downstream 10.0kb downstream 11715 true chr2: 4781097-4792811 Medicago truncatula
Medtr2g015920 10.0kb downstream 10.0kb downstream 10000 false chr2: 4782812-4792811 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121780807 5273 Angiosperm View MSA
122297847 5265 Fabidae View MSA
124036180 5270 Rosid View MSA
123747945 5271 Pentapetalae View MSA
122772367 5272 Eudicot View MSA
121052407 5274 Embryophyte View MSA
123092456 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.097        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.249        
cufflinks 0.008     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain