Gene : Medtr2g015840 M. truncatula Mt4.0v1
Defline:  (1 of 1) PF00112//PF03051//PF08246 - Papain family cysteine protease (Peptidase_C1) // Peptidase C1-like family (Peptidase_C1_2) // Cathepsin propeptide inhibitor domain (I29) (Inhibitor_I29) Description:  papain family cysteine protease
Genomic Order:  707 Name:  ? Medtr2g015840
Secondary Identifier:  ? PAC:31062126
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g015840 0.5kb upstream 0.5kb upstream 2040 true chr2: 4734530-4736569 Medicago truncatula
Medtr2g015840 0.5kb upstream 0.5kb upstream 500 false chr2: 4734530-4735029 Medicago truncatula
Medtr2g015840 0.5kb downstream 0.5kb downstream 2040 true chr2: 4735030-4737069 Medicago truncatula
Medtr2g015840 0.5kb downstream 0.5kb downstream 500 false chr2: 4736570-4737069 Medicago truncatula
Medtr2g015840 1.0kb upstream 1.0kb upstream 2540 true chr2: 4734030-4736569 Medicago truncatula
Medtr2g015840 1.0kb upstream 1.0kb upstream 1000 false chr2: 4734030-4735029 Medicago truncatula
Medtr2g015840 1.0kb downstream 1.0kb downstream 2540 true chr2: 4735030-4737569 Medicago truncatula
Medtr2g015840 1.0kb downstream 1.0kb downstream 1000 false chr2: 4736570-4737569 Medicago truncatula
Medtr2g015840 2.0kb upstream 2.0kb upstream 3540 true chr2: 4733030-4736569 Medicago truncatula
Medtr2g015840 2.0kb upstream 2.0kb upstream 2000 false chr2: 4733030-4735029 Medicago truncatula
Medtr2g015840 2.0kb downstream 2.0kb downstream 3540 true chr2: 4735030-4738569 Medicago truncatula
Medtr2g015840 2.0kb downstream 2.0kb downstream 2000 false chr2: 4736570-4738569 Medicago truncatula
Medtr2g015840 5.0kb upstream 5.0kb upstream 6540 true chr2: 4730030-4736569 Medicago truncatula
Medtr2g015840 5.0kb upstream 5.0kb upstream 5000 false chr2: 4730030-4735029 Medicago truncatula
Medtr2g015840 5.0kb downstream 5.0kb downstream 6540 true chr2: 4735030-4741569 Medicago truncatula
Medtr2g015840 5.0kb downstream 5.0kb downstream 5000 false chr2: 4736570-4741569 Medicago truncatula
Medtr2g015840 10.0kb upstream 10.0kb upstream 11540 true chr2: 4725030-4736569 Medicago truncatula
Medtr2g015840 10.0kb upstream 10.0kb upstream 10000 false chr2: 4725030-4735029 Medicago truncatula
Medtr2g015840 10.0kb downstream 10.0kb downstream 11540 true chr2: 4735030-4746569 Medicago truncatula
Medtr2g015840 10.0kb downstream 10.0kb downstream 10000 false chr2: 4736570-4746569 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122030352 5273 Angiosperm View MSA
122316135 5265 Fabidae View MSA
124051561 5270 Rosid View MSA
123753893 5271 Pentapetalae View MSA
122775321 5272 Eudicot View MSA
121351776 5274 Embryophyte View MSA
123382319 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 15.232     High  
cufflinks 0.18       Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 8.94        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.861        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain