Gene : Medtr2g015560 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR18968//PTHR18968:SF132 - THIAMINE PYROPHOSPHATE ENZYMES Description:  pyruvate decarboxylase
Genomic Order:  683 Name:  ? Medtr2g015560
Secondary Identifier:  ? PAC:31069098
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5486 Medicago truncatula pathologic  
Mtruncatula PWY-6330 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g015560 0.5kb upstream 0.5kb upstream 4492 true chr2: 4623678-4628169 Medicago truncatula
Medtr2g015560 0.5kb upstream 0.5kb upstream 500 false chr2: 4623678-4624177 Medicago truncatula
Medtr2g015560 0.5kb downstream 0.5kb downstream 4492 true chr2: 4624178-4628669 Medicago truncatula
Medtr2g015560 0.5kb downstream 0.5kb downstream 500 false chr2: 4628170-4628669 Medicago truncatula
Medtr2g015560 1.0kb upstream 1.0kb upstream 4992 true chr2: 4623178-4628169 Medicago truncatula
Medtr2g015560 1.0kb upstream 1.0kb upstream 1000 false chr2: 4623178-4624177 Medicago truncatula
Medtr2g015560 1.0kb downstream 1.0kb downstream 4992 true chr2: 4624178-4629169 Medicago truncatula
Medtr2g015560 1.0kb downstream 1.0kb downstream 1000 false chr2: 4628170-4629169 Medicago truncatula
Medtr2g015560 2.0kb upstream 2.0kb upstream 5992 true chr2: 4622178-4628169 Medicago truncatula
Medtr2g015560 2.0kb upstream 2.0kb upstream 2000 false chr2: 4622178-4624177 Medicago truncatula
Medtr2g015560 2.0kb downstream 2.0kb downstream 5992 true chr2: 4624178-4630169 Medicago truncatula
Medtr2g015560 2.0kb downstream 2.0kb downstream 2000 false chr2: 4628170-4630169 Medicago truncatula
Medtr2g015560 5.0kb upstream 5.0kb upstream 8992 true chr2: 4619178-4628169 Medicago truncatula
Medtr2g015560 5.0kb upstream 5.0kb upstream 5000 false chr2: 4619178-4624177 Medicago truncatula
Medtr2g015560 5.0kb downstream 5.0kb downstream 8992 true chr2: 4624178-4633169 Medicago truncatula
Medtr2g015560 5.0kb downstream 5.0kb downstream 5000 false chr2: 4628170-4633169 Medicago truncatula
Medtr2g015560 10.0kb upstream 10.0kb upstream 13992 true chr2: 4614178-4628169 Medicago truncatula
Medtr2g015560 10.0kb upstream 10.0kb upstream 10000 false chr2: 4614178-4624177 Medicago truncatula
Medtr2g015560 10.0kb downstream 10.0kb downstream 13992 true chr2: 4624178-4638169 Medicago truncatula
Medtr2g015560 10.0kb downstream 10.0kb downstream 10000 false chr2: 4628170-4638169 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791820 5273 Angiosperm View MSA
122302892 5265 Fabidae View MSA
124070519 5270 Rosid View MSA
123742600 5271 Pentapetalae View MSA
122794163 5272 Eudicot View MSA
121351042 5274 Embryophyte View MSA
123426958 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 503.498     High High
cufflinks 25.256     High  
cufflinks 18.664     High Low
cufflinks 226.237     High  
cufflinks 15.039     High Low
cufflinks 105.706     High  
cufflinks 634.013     High High
cufflinks 23.706     High  
cufflinks 581.197     High High

0 Strain