Gene : Medtr2g018750 M. truncatula Mt4.0v1
Defline:  (1 of 21) PF00651//PF03000 - BTB/POZ domain (BTB) // NPH3 family (NPH3) Description:  phototropic-responsive NPH3 family protein
Genomic Order:  882 Name:  ? Medtr2g018750
Secondary Identifier:  ? PAC:31063804
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g018750 0.5kb upstream 0.5kb upstream 3919 true chr2: 5947694-5951612 Medicago truncatula
Medtr2g018750 0.5kb upstream 0.5kb upstream 500 false chr2: 5947694-5948193 Medicago truncatula
Medtr2g018750 0.5kb downstream 0.5kb downstream 3919 true chr2: 5948194-5952112 Medicago truncatula
Medtr2g018750 0.5kb downstream 0.5kb downstream 500 false chr2: 5951613-5952112 Medicago truncatula
Medtr2g018750 1.0kb upstream 1.0kb upstream 4419 true chr2: 5947194-5951612 Medicago truncatula
Medtr2g018750 1.0kb upstream 1.0kb upstream 1000 false chr2: 5947194-5948193 Medicago truncatula
Medtr2g018750 1.0kb downstream 1.0kb downstream 4419 true chr2: 5948194-5952612 Medicago truncatula
Medtr2g018750 1.0kb downstream 1.0kb downstream 1000 false chr2: 5951613-5952612 Medicago truncatula
Medtr2g018750 2.0kb upstream 2.0kb upstream 5419 true chr2: 5946194-5951612 Medicago truncatula
Medtr2g018750 2.0kb upstream 2.0kb upstream 2000 false chr2: 5946194-5948193 Medicago truncatula
Medtr2g018750 2.0kb downstream 2.0kb downstream 5419 true chr2: 5948194-5953612 Medicago truncatula
Medtr2g018750 2.0kb downstream 2.0kb downstream 2000 false chr2: 5951613-5953612 Medicago truncatula
Medtr2g018750 5.0kb upstream 5.0kb upstream 8419 true chr2: 5943194-5951612 Medicago truncatula
Medtr2g018750 5.0kb upstream 5.0kb upstream 5000 false chr2: 5943194-5948193 Medicago truncatula
Medtr2g018750 5.0kb downstream 5.0kb downstream 8419 true chr2: 5948194-5956612 Medicago truncatula
Medtr2g018750 5.0kb downstream 5.0kb downstream 5000 false chr2: 5951613-5956612 Medicago truncatula
Medtr2g018750 10.0kb upstream 10.0kb upstream 13419 true chr2: 5938194-5951612 Medicago truncatula
Medtr2g018750 10.0kb upstream 10.0kb upstream 10000 false chr2: 5938194-5948193 Medicago truncatula
Medtr2g018750 10.0kb downstream 10.0kb downstream 13419 true chr2: 5948194-5961612 Medicago truncatula
Medtr2g018750 10.0kb downstream 10.0kb downstream 10000 false chr2: 5951613-5961612 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306688 5265 Fabidae View MSA
124071972 5270 Rosid View MSA
123743168 5271 Pentapetalae View MSA
122791271 5272 Eudicot View MSA
122050644 5273 Angiosperm View MSA
121312043 5274 Embryophyte View MSA
123349254 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.01     Low  
cufflinks 0.09       High
cufflinks 0.091       High
cufflinks 0.007     Low Low
cufflinks 0.071        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.012     Low  
cufflinks 0.074        
cufflinks 0.011     Low  

0 Strain