Gene : Medtr2g009340 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR32370:SF6 - ROOT PHOTOTROPISM PROTEIN 3 Description:  phototropic-responsive NPH3 family protein
Genomic Order:  270 Name:  ? Medtr2g009340
Secondary Identifier:  ? PAC:31069111
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g009340 0.5kb upstream 0.5kb upstream 4009 true chr2: 1882629-1886637 Medicago truncatula
Medtr2g009340 0.5kb upstream 0.5kb upstream 500 false chr2: 1882629-1883128 Medicago truncatula
Medtr2g009340 0.5kb downstream 0.5kb downstream 4009 true chr2: 1883129-1887137 Medicago truncatula
Medtr2g009340 0.5kb downstream 0.5kb downstream 500 false chr2: 1886638-1887137 Medicago truncatula
Medtr2g009340 1.0kb upstream 1.0kb upstream 4509 true chr2: 1882129-1886637 Medicago truncatula
Medtr2g009340 1.0kb upstream 1.0kb upstream 1000 false chr2: 1882129-1883128 Medicago truncatula
Medtr2g009340 1.0kb downstream 1.0kb downstream 4509 true chr2: 1883129-1887637 Medicago truncatula
Medtr2g009340 1.0kb downstream 1.0kb downstream 1000 false chr2: 1886638-1887637 Medicago truncatula
Medtr2g009340 2.0kb upstream 2.0kb upstream 5509 true chr2: 1881129-1886637 Medicago truncatula
Medtr2g009340 2.0kb upstream 2.0kb upstream 2000 false chr2: 1881129-1883128 Medicago truncatula
Medtr2g009340 2.0kb downstream 2.0kb downstream 5509 true chr2: 1883129-1888637 Medicago truncatula
Medtr2g009340 2.0kb downstream 2.0kb downstream 2000 false chr2: 1886638-1888637 Medicago truncatula
Medtr2g009340 5.0kb upstream 5.0kb upstream 8509 true chr2: 1878129-1886637 Medicago truncatula
Medtr2g009340 5.0kb upstream 5.0kb upstream 5000 false chr2: 1878129-1883128 Medicago truncatula
Medtr2g009340 5.0kb downstream 5.0kb downstream 8509 true chr2: 1883129-1891637 Medicago truncatula
Medtr2g009340 5.0kb downstream 5.0kb downstream 5000 false chr2: 1886638-1891637 Medicago truncatula
Medtr2g009340 10.0kb upstream 10.0kb upstream 13509 true chr2: 1873129-1886637 Medicago truncatula
Medtr2g009340 10.0kb upstream 10.0kb upstream 10000 false chr2: 1873129-1883128 Medicago truncatula
Medtr2g009340 10.0kb downstream 10.0kb downstream 13509 true chr2: 1883129-1896637 Medicago truncatula
Medtr2g009340 10.0kb downstream 10.0kb downstream 10000 false chr2: 1886638-1896637 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296483 5265 Fabidae View MSA
124063481 5270 Rosid View MSA
123746549 5271 Pentapetalae View MSA
122794613 5272 Eudicot View MSA
122049761 5273 Angiosperm View MSA
121347435 5274 Embryophyte View MSA
123380549 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.085        
cufflinks 2.626        
cufflinks 2.068        
cufflinks 0.109        
cufflinks 3.317       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.034     Low Low
cufflinks 2.189        
cufflinks 0.1        

0 Strain