Gene : Medtr2g009980 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR22601:SF11 - OLIGOPEPTIDE TRANSPORTER 4 Description:  oligopeptide transporter OPT family protein
Genomic Order:  310 Name:  ? Medtr2g009980
Secondary Identifier:  ? PAC:31067297
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g009980 0.5kb upstream 0.5kb upstream 7205 true chr2: 2169923-2177127 Medicago truncatula
Medtr2g009980 0.5kb upstream 0.5kb upstream 500 false chr2: 2176628-2177127 Medicago truncatula
Medtr2g009980 0.5kb downstream 0.5kb downstream 7205 true chr2: 2169423-2176627 Medicago truncatula
Medtr2g009980 0.5kb downstream 0.5kb downstream 500 false chr2: 2169423-2169922 Medicago truncatula
Medtr2g009980 1.0kb upstream 1.0kb upstream 7705 true chr2: 2169923-2177627 Medicago truncatula
Medtr2g009980 1.0kb upstream 1.0kb upstream 1000 false chr2: 2176628-2177627 Medicago truncatula
Medtr2g009980 1.0kb downstream 1.0kb downstream 7705 true chr2: 2168923-2176627 Medicago truncatula
Medtr2g009980 1.0kb downstream 1.0kb downstream 1000 false chr2: 2168923-2169922 Medicago truncatula
Medtr2g009980 2.0kb upstream 2.0kb upstream 8705 true chr2: 2169923-2178627 Medicago truncatula
Medtr2g009980 2.0kb upstream 2.0kb upstream 2000 false chr2: 2176628-2178627 Medicago truncatula
Medtr2g009980 2.0kb downstream 2.0kb downstream 8705 true chr2: 2167923-2176627 Medicago truncatula
Medtr2g009980 2.0kb downstream 2.0kb downstream 2000 false chr2: 2167923-2169922 Medicago truncatula
Medtr2g009980 5.0kb upstream 5.0kb upstream 11705 true chr2: 2169923-2181627 Medicago truncatula
Medtr2g009980 5.0kb upstream 5.0kb upstream 5000 false chr2: 2176628-2181627 Medicago truncatula
Medtr2g009980 5.0kb downstream 5.0kb downstream 11705 true chr2: 2164923-2176627 Medicago truncatula
Medtr2g009980 5.0kb downstream 5.0kb downstream 5000 false chr2: 2164923-2169922 Medicago truncatula
Medtr2g009980 10.0kb upstream 10.0kb upstream 16705 true chr2: 2169923-2186627 Medicago truncatula
Medtr2g009980 10.0kb upstream 10.0kb upstream 10000 false chr2: 2176628-2186627 Medicago truncatula
Medtr2g009980 10.0kb downstream 10.0kb downstream 16705 true chr2: 2159923-2176627 Medicago truncatula
Medtr2g009980 10.0kb downstream 10.0kb downstream 10000 false chr2: 2159923-2169922 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313320 5265 Fabidae View MSA
124072346 5270 Rosid View MSA
123738802 5271 Pentapetalae View MSA
122788637 5272 Eudicot View MSA
122046931 5273 Angiosperm View MSA
121351141 5274 Embryophyte View MSA
123382023 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.551       Low
cufflinks 19.677     High  
cufflinks 18.156     High  
cufflinks 37.021     High High
cufflinks 16.409     High  
cufflinks 7.734        
cufflinks 14.489     High  
cufflinks 18.452     High  
cufflinks 15.625     High  

0 Strain