Gene : Medtr2g011820 M. truncatula Mt4.0v1
Defline:  (1 of 2) 2.7.1.91 - Sphinganine kinase / Dihydrosphingosine kinase Description:  D-erythro-sphingosine kinase/diacylglycerol kinase
Genomic Order:  449 Name:  ? Medtr2g011820
Secondary Identifier:  ? PAC:31062108
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5129 Medicago truncatula pathologic  
Mtruncatula PWY-6483 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g011820 0.5kb upstream 0.5kb upstream 6642 true chr2: 2972458-2979099 Medicago truncatula
Medtr2g011820 0.5kb upstream 0.5kb upstream 500 false chr2: 2972458-2972957 Medicago truncatula
Medtr2g011820 0.5kb downstream 0.5kb downstream 6642 true chr2: 2972958-2979599 Medicago truncatula
Medtr2g011820 0.5kb downstream 0.5kb downstream 500 false chr2: 2979100-2979599 Medicago truncatula
Medtr2g011820 1.0kb upstream 1.0kb upstream 7142 true chr2: 2971958-2979099 Medicago truncatula
Medtr2g011820 1.0kb upstream 1.0kb upstream 1000 false chr2: 2971958-2972957 Medicago truncatula
Medtr2g011820 1.0kb downstream 1.0kb downstream 7142 true chr2: 2972958-2980099 Medicago truncatula
Medtr2g011820 1.0kb downstream 1.0kb downstream 1000 false chr2: 2979100-2980099 Medicago truncatula
Medtr2g011820 2.0kb upstream 2.0kb upstream 8142 true chr2: 2970958-2979099 Medicago truncatula
Medtr2g011820 2.0kb upstream 2.0kb upstream 2000 false chr2: 2970958-2972957 Medicago truncatula
Medtr2g011820 2.0kb downstream 2.0kb downstream 8142 true chr2: 2972958-2981099 Medicago truncatula
Medtr2g011820 2.0kb downstream 2.0kb downstream 2000 false chr2: 2979100-2981099 Medicago truncatula
Medtr2g011820 5.0kb upstream 5.0kb upstream 11142 true chr2: 2967958-2979099 Medicago truncatula
Medtr2g011820 5.0kb upstream 5.0kb upstream 5000 false chr2: 2967958-2972957 Medicago truncatula
Medtr2g011820 5.0kb downstream 5.0kb downstream 11142 true chr2: 2972958-2984099 Medicago truncatula
Medtr2g011820 5.0kb downstream 5.0kb downstream 5000 false chr2: 2979100-2984099 Medicago truncatula
Medtr2g011820 10.0kb upstream 10.0kb upstream 16142 true chr2: 2962958-2979099 Medicago truncatula
Medtr2g011820 10.0kb upstream 10.0kb upstream 10000 false chr2: 2962958-2972957 Medicago truncatula
Medtr2g011820 10.0kb downstream 10.0kb downstream 16142 true chr2: 2972958-2989099 Medicago truncatula
Medtr2g011820 10.0kb downstream 10.0kb downstream 10000 false chr2: 2979100-2989099 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314274 5265 Fabidae View MSA
124066639 5270 Rosid View MSA
123737091 5271 Pentapetalae View MSA
122793625 5272 Eudicot View MSA
122045440 5273 Angiosperm View MSA
121350923 5274 Embryophyte View MSA
123428396 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.359        
cufflinks 10.042     High High
cufflinks 6.575        
cufflinks 8.609        
cufflinks 4.698       Low
cufflinks 4.243       Low
cufflinks 9.892       High
cufflinks 8.381        
cufflinks 5.837        

0 Strain