Gene : Medtr2g013130 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR23139//PTHR23139:SF61 - RNA-BINDING PROTEIN Description:  U2 snRNP auxilliary factor, large subunit, splicing factor
Genomic Order:  520 Name:  ? Medtr2g013130
Secondary Identifier:  ? PAC:31063964
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g013130 0.5kb upstream 0.5kb upstream 10241 true chr2: 3475403-3485643 Medicago truncatula
Medtr2g013130 0.5kb upstream 0.5kb upstream 500 false chr2: 3475403-3475902 Medicago truncatula
Medtr2g013130 0.5kb downstream 0.5kb downstream 10241 true chr2: 3475903-3486143 Medicago truncatula
Medtr2g013130 0.5kb downstream 0.5kb downstream 500 false chr2: 3485644-3486143 Medicago truncatula
Medtr2g013130 1.0kb upstream 1.0kb upstream 10741 true chr2: 3474903-3485643 Medicago truncatula
Medtr2g013130 1.0kb upstream 1.0kb upstream 1000 false chr2: 3474903-3475902 Medicago truncatula
Medtr2g013130 1.0kb downstream 1.0kb downstream 10741 true chr2: 3475903-3486643 Medicago truncatula
Medtr2g013130 1.0kb downstream 1.0kb downstream 1000 false chr2: 3485644-3486643 Medicago truncatula
Medtr2g013130 2.0kb upstream 2.0kb upstream 11741 true chr2: 3473903-3485643 Medicago truncatula
Medtr2g013130 2.0kb upstream 2.0kb upstream 2000 false chr2: 3473903-3475902 Medicago truncatula
Medtr2g013130 2.0kb downstream 2.0kb downstream 11741 true chr2: 3475903-3487643 Medicago truncatula
Medtr2g013130 2.0kb downstream 2.0kb downstream 2000 false chr2: 3485644-3487643 Medicago truncatula
Medtr2g013130 5.0kb upstream 5.0kb upstream 14741 true chr2: 3470903-3485643 Medicago truncatula
Medtr2g013130 5.0kb upstream 5.0kb upstream 5000 false chr2: 3470903-3475902 Medicago truncatula
Medtr2g013130 5.0kb downstream 5.0kb downstream 14741 true chr2: 3475903-3490643 Medicago truncatula
Medtr2g013130 5.0kb downstream 5.0kb downstream 5000 false chr2: 3485644-3490643 Medicago truncatula
Medtr2g013130 10.0kb upstream 10.0kb upstream 19741 true chr2: 3465903-3485643 Medicago truncatula
Medtr2g013130 10.0kb upstream 10.0kb upstream 10000 false chr2: 3465903-3475902 Medicago truncatula
Medtr2g013130 10.0kb downstream 10.0kb downstream 19741 true chr2: 3475903-3495643 Medicago truncatula
Medtr2g013130 10.0kb downstream 10.0kb downstream 10000 false chr2: 3485644-3495643 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310951 5265 Fabidae View MSA
124065257 5270 Rosid View MSA
123749949 5271 Pentapetalae View MSA
122795253 5272 Eudicot View MSA
122050030 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349493 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.767        
cufflinks 0.686        
cufflinks 0.743        
cufflinks 0.32        
cufflinks 0.742        
cufflinks 0.194       Low
cufflinks 0.44        
cufflinks 0.777        
cufflinks 0.308        

0 Strain