Gene : Medtr2g005500 M. truncatula Mt4.0v1
Defline:  (1 of 4) KOG0084 - GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins Description:  RAB GTPase-like protein B1C
Genomic Order:  22 Name:  ? Medtr2g005500
Secondary Identifier:  ? PAC:31062234
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g005500 0.5kb upstream 0.5kb upstream 1910 true chr2: 184131-186040 Medicago truncatula
Medtr2g005500 0.5kb upstream 0.5kb upstream 500 false chr2: 184131-184630 Medicago truncatula
Medtr2g005500 0.5kb downstream 0.5kb downstream 1910 true chr2: 184631-186540 Medicago truncatula
Medtr2g005500 0.5kb downstream 0.5kb downstream 500 false chr2: 186041-186540 Medicago truncatula
Medtr2g005500 1.0kb upstream 1.0kb upstream 2410 true chr2: 183631-186040 Medicago truncatula
Medtr2g005500 1.0kb upstream 1.0kb upstream 1000 false chr2: 183631-184630 Medicago truncatula
Medtr2g005500 1.0kb downstream 1.0kb downstream 2410 true chr2: 184631-187040 Medicago truncatula
Medtr2g005500 1.0kb downstream 1.0kb downstream 1000 false chr2: 186041-187040 Medicago truncatula
Medtr2g005500 2.0kb upstream 2.0kb upstream 3410 true chr2: 182631-186040 Medicago truncatula
Medtr2g005500 2.0kb upstream 2.0kb upstream 2000 false chr2: 182631-184630 Medicago truncatula
Medtr2g005500 2.0kb downstream 2.0kb downstream 3410 true chr2: 184631-188040 Medicago truncatula
Medtr2g005500 2.0kb downstream 2.0kb downstream 2000 false chr2: 186041-188040 Medicago truncatula
Medtr2g005500 5.0kb upstream 5.0kb upstream 6410 true chr2: 179631-186040 Medicago truncatula
Medtr2g005500 5.0kb upstream 5.0kb upstream 5000 false chr2: 179631-184630 Medicago truncatula
Medtr2g005500 5.0kb downstream 5.0kb downstream 6410 true chr2: 184631-191040 Medicago truncatula
Medtr2g005500 5.0kb downstream 5.0kb downstream 5000 false chr2: 186041-191040 Medicago truncatula
Medtr2g005500 10.0kb upstream 10.0kb upstream 11410 true chr2: 174631-186040 Medicago truncatula
Medtr2g005500 10.0kb upstream 10.0kb upstream 10000 false chr2: 174631-184630 Medicago truncatula
Medtr2g005500 10.0kb downstream 10.0kb downstream 11410 true chr2: 184631-196040 Medicago truncatula
Medtr2g005500 10.0kb downstream 10.0kb downstream 10000 false chr2: 186041-196040 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307543 5265 Fabidae View MSA
124069076 5270 Rosid View MSA
123751824 5271 Pentapetalae View MSA
122790166 5272 Eudicot View MSA
122051400 5273 Angiosperm View MSA
121350724 5274 Embryophyte View MSA
123381858 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.723       High
cufflinks 5.36        
cufflinks 6.489        
cufflinks 2.391        
cufflinks 5.832        
cufflinks 1.203       Low
cufflinks 4.749        
cufflinks 4.842        
cufflinks 3.992        

0 Strain