Gene : Medtr2g005600 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR13112:SF0 - FI21285P1 Description:  Smg-4/UPF3 family protein
Genomic Order:  26 Name:  ? Medtr2g005600
Secondary Identifier:  ? PAC:31063623
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g005600 0.5kb upstream 0.5kb upstream 5998 true chr2: 224629-230626 Medicago truncatula
Medtr2g005600 0.5kb upstream 0.5kb upstream 500 false chr2: 224629-225128 Medicago truncatula
Medtr2g005600 0.5kb downstream 0.5kb downstream 5998 true chr2: 225129-231126 Medicago truncatula
Medtr2g005600 0.5kb downstream 0.5kb downstream 500 false chr2: 230627-231126 Medicago truncatula
Medtr2g005600 1.0kb upstream 1.0kb upstream 6498 true chr2: 224129-230626 Medicago truncatula
Medtr2g005600 1.0kb upstream 1.0kb upstream 1000 false chr2: 224129-225128 Medicago truncatula
Medtr2g005600 1.0kb downstream 1.0kb downstream 6498 true chr2: 225129-231626 Medicago truncatula
Medtr2g005600 1.0kb downstream 1.0kb downstream 1000 false chr2: 230627-231626 Medicago truncatula
Medtr2g005600 2.0kb upstream 2.0kb upstream 7498 true chr2: 223129-230626 Medicago truncatula
Medtr2g005600 2.0kb upstream 2.0kb upstream 2000 false chr2: 223129-225128 Medicago truncatula
Medtr2g005600 2.0kb downstream 2.0kb downstream 7498 true chr2: 225129-232626 Medicago truncatula
Medtr2g005600 2.0kb downstream 2.0kb downstream 2000 false chr2: 230627-232626 Medicago truncatula
Medtr2g005600 5.0kb upstream 5.0kb upstream 10498 true chr2: 220129-230626 Medicago truncatula
Medtr2g005600 5.0kb upstream 5.0kb upstream 5000 false chr2: 220129-225128 Medicago truncatula
Medtr2g005600 5.0kb downstream 5.0kb downstream 10498 true chr2: 225129-235626 Medicago truncatula
Medtr2g005600 5.0kb downstream 5.0kb downstream 5000 false chr2: 230627-235626 Medicago truncatula
Medtr2g005600 10.0kb upstream 10.0kb upstream 15498 true chr2: 215129-230626 Medicago truncatula
Medtr2g005600 10.0kb upstream 10.0kb upstream 10000 false chr2: 215129-225128 Medicago truncatula
Medtr2g005600 10.0kb downstream 10.0kb downstream 15498 true chr2: 225129-240626 Medicago truncatula
Medtr2g005600 10.0kb downstream 10.0kb downstream 10000 false chr2: 230627-240626 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041498 5273 Angiosperm View MSA
122300753 5265 Fabidae View MSA
124070961 5270 Rosid View MSA
123750498 5271 Pentapetalae View MSA
122788511 5272 Eudicot View MSA
121351189 5274 Embryophyte View MSA
123425600 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.84       High
cufflinks 2.415        
cufflinks 2.95        
cufflinks 2.475        
cufflinks 2.598        
cufflinks 1.912       Low
cufflinks 6.391       High
cufflinks 2.407        
cufflinks 5.137       High

0 Strain