Gene : Medtr2g006350 M. truncatula Mt4.0v1
Defline:  (1 of 1) 2.7.4.7 - Phosphomethylpyrimidine kinase / Hydroxymethylpyrimidine phosphokinase Description:  thiamine-phosphate pyrophosphorylase
Genomic Order:  78 Name:  ? Medtr2g006350
Secondary Identifier:  ? PAC:31063524
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6890 Medicago truncatula pathologic  
Mtruncatula PWY-6908 Medicago truncatula pathologic  
Mtruncatula PWY-6910 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g006350 0.5kb upstream 0.5kb upstream 5057 true chr2: 546678-551734 Medicago truncatula
Medtr2g006350 0.5kb upstream 0.5kb upstream 500 false chr2: 551235-551734 Medicago truncatula
Medtr2g006350 0.5kb downstream 0.5kb downstream 5057 true chr2: 546178-551234 Medicago truncatula
Medtr2g006350 0.5kb downstream 0.5kb downstream 500 false chr2: 546178-546677 Medicago truncatula
Medtr2g006350 1.0kb upstream 1.0kb upstream 5557 true chr2: 546678-552234 Medicago truncatula
Medtr2g006350 1.0kb upstream 1.0kb upstream 1000 false chr2: 551235-552234 Medicago truncatula
Medtr2g006350 1.0kb downstream 1.0kb downstream 5557 true chr2: 545678-551234 Medicago truncatula
Medtr2g006350 1.0kb downstream 1.0kb downstream 1000 false chr2: 545678-546677 Medicago truncatula
Medtr2g006350 2.0kb upstream 2.0kb upstream 6557 true chr2: 546678-553234 Medicago truncatula
Medtr2g006350 2.0kb upstream 2.0kb upstream 2000 false chr2: 551235-553234 Medicago truncatula
Medtr2g006350 2.0kb downstream 2.0kb downstream 6557 true chr2: 544678-551234 Medicago truncatula
Medtr2g006350 2.0kb downstream 2.0kb downstream 2000 false chr2: 544678-546677 Medicago truncatula
Medtr2g006350 5.0kb upstream 5.0kb upstream 9557 true chr2: 546678-556234 Medicago truncatula
Medtr2g006350 5.0kb upstream 5.0kb upstream 5000 false chr2: 551235-556234 Medicago truncatula
Medtr2g006350 5.0kb downstream 5.0kb downstream 9557 true chr2: 541678-551234 Medicago truncatula
Medtr2g006350 5.0kb downstream 5.0kb downstream 5000 false chr2: 541678-546677 Medicago truncatula
Medtr2g006350 10.0kb upstream 10.0kb upstream 14557 true chr2: 546678-561234 Medicago truncatula
Medtr2g006350 10.0kb upstream 10.0kb upstream 10000 false chr2: 551235-561234 Medicago truncatula
Medtr2g006350 10.0kb downstream 10.0kb downstream 14557 true chr2: 536678-551234 Medicago truncatula
Medtr2g006350 10.0kb downstream 10.0kb downstream 10000 false chr2: 536678-546677 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309007 5265 Fabidae View MSA
124063802 5270 Rosid View MSA
123739977 5271 Pentapetalae View MSA
122792526 5272 Eudicot View MSA
122045389 5273 Angiosperm View MSA
121344045 5274 Embryophyte View MSA
123424693 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.732        
cufflinks 2.723        
cufflinks 4.269        
cufflinks 1.747        
cufflinks 4.295        
cufflinks 0.725       Low
cufflinks 2.63        
cufflinks 2.896        
cufflinks 4.527        

0 Strain