Gene : Medtr2g008970 M. truncatula Mt4.0v1
Defline:  (1 of 10) KOG1546 - Metacaspase involved in regulation of apoptosis Description:  ICE-like protease (caspase) p20 domain protein
Genomic Order:  245 Name:  ? Medtr2g008970
Secondary Identifier:  ? PAC:31067972
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g008970 0.5kb upstream 0.5kb upstream 2885 true chr2: 1711753-1714637 Medicago truncatula
Medtr2g008970 0.5kb upstream 0.5kb upstream 500 false chr2: 1714138-1714637 Medicago truncatula
Medtr2g008970 0.5kb downstream 0.5kb downstream 2885 true chr2: 1711253-1714137 Medicago truncatula
Medtr2g008970 0.5kb downstream 0.5kb downstream 500 false chr2: 1711253-1711752 Medicago truncatula
Medtr2g008970 1.0kb upstream 1.0kb upstream 3385 true chr2: 1711753-1715137 Medicago truncatula
Medtr2g008970 1.0kb upstream 1.0kb upstream 1000 false chr2: 1714138-1715137 Medicago truncatula
Medtr2g008970 1.0kb downstream 1.0kb downstream 3385 true chr2: 1710753-1714137 Medicago truncatula
Medtr2g008970 1.0kb downstream 1.0kb downstream 1000 false chr2: 1710753-1711752 Medicago truncatula
Medtr2g008970 2.0kb upstream 2.0kb upstream 4385 true chr2: 1711753-1716137 Medicago truncatula
Medtr2g008970 2.0kb upstream 2.0kb upstream 2000 false chr2: 1714138-1716137 Medicago truncatula
Medtr2g008970 2.0kb downstream 2.0kb downstream 4385 true chr2: 1709753-1714137 Medicago truncatula
Medtr2g008970 2.0kb downstream 2.0kb downstream 2000 false chr2: 1709753-1711752 Medicago truncatula
Medtr2g008970 5.0kb upstream 5.0kb upstream 7385 true chr2: 1711753-1719137 Medicago truncatula
Medtr2g008970 5.0kb upstream 5.0kb upstream 5000 false chr2: 1714138-1719137 Medicago truncatula
Medtr2g008970 5.0kb downstream 5.0kb downstream 7385 true chr2: 1706753-1714137 Medicago truncatula
Medtr2g008970 5.0kb downstream 5.0kb downstream 5000 false chr2: 1706753-1711752 Medicago truncatula
Medtr2g008970 10.0kb upstream 10.0kb upstream 12385 true chr2: 1711753-1724137 Medicago truncatula
Medtr2g008970 10.0kb upstream 10.0kb upstream 10000 false chr2: 1714138-1724137 Medicago truncatula
Medtr2g008970 10.0kb downstream 10.0kb downstream 12385 true chr2: 1701753-1714137 Medicago truncatula
Medtr2g008970 10.0kb downstream 10.0kb downstream 10000 false chr2: 1701753-1711752 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297835 5265 Fabidae View MSA
124037273 5270 Rosid View MSA
123744103 5271 Pentapetalae View MSA
122795793 5272 Eudicot View MSA
122050099 5273 Angiosperm View MSA
123428899 5275 Viridiplantae View MSA
121348125 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.17       Low
cufflinks 7.855        
cufflinks 8.255        
cufflinks 2.651        
cufflinks 5.822        
cufflinks 2.235        
cufflinks 7.009        
cufflinks 7.238        
cufflinks 11.991     High  

0 Strain