Gene : Medtr2g008840 M. truncatula Mt4.0v1
Defline:  (1 of 1) PF00612//PF01833//PF03859//PF12796 - IQ calmodulin-binding motif (IQ) // IPT/TIG domain (TIG) // CG-1 domain (CG-1) // Ankyrin repeats (3 copies) (Ank_2) Description:  calmodulin-binding transcription activator 1
Genomic Order:  237 Name:  ? Medtr2g008840
Secondary Identifier:  ? PAC:31062461
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g008840 0.5kb upstream 0.5kb upstream 13946 true chr2: 1646046-1659991 Medicago truncatula
Medtr2g008840 0.5kb upstream 0.5kb upstream 500 false chr2: 1646046-1646545 Medicago truncatula
Medtr2g008840 0.5kb downstream 0.5kb downstream 13946 true chr2: 1646546-1660491 Medicago truncatula
Medtr2g008840 0.5kb downstream 0.5kb downstream 500 false chr2: 1659992-1660491 Medicago truncatula
Medtr2g008840 1.0kb upstream 1.0kb upstream 14446 true chr2: 1645546-1659991 Medicago truncatula
Medtr2g008840 1.0kb upstream 1.0kb upstream 1000 false chr2: 1645546-1646545 Medicago truncatula
Medtr2g008840 1.0kb downstream 1.0kb downstream 14446 true chr2: 1646546-1660991 Medicago truncatula
Medtr2g008840 1.0kb downstream 1.0kb downstream 1000 false chr2: 1659992-1660991 Medicago truncatula
Medtr2g008840 2.0kb upstream 2.0kb upstream 15446 true chr2: 1644546-1659991 Medicago truncatula
Medtr2g008840 2.0kb upstream 2.0kb upstream 2000 false chr2: 1644546-1646545 Medicago truncatula
Medtr2g008840 2.0kb downstream 2.0kb downstream 15446 true chr2: 1646546-1661991 Medicago truncatula
Medtr2g008840 2.0kb downstream 2.0kb downstream 2000 false chr2: 1659992-1661991 Medicago truncatula
Medtr2g008840 5.0kb upstream 5.0kb upstream 18446 true chr2: 1641546-1659991 Medicago truncatula
Medtr2g008840 5.0kb upstream 5.0kb upstream 5000 false chr2: 1641546-1646545 Medicago truncatula
Medtr2g008840 5.0kb downstream 5.0kb downstream 18446 true chr2: 1646546-1664991 Medicago truncatula
Medtr2g008840 5.0kb downstream 5.0kb downstream 5000 false chr2: 1659992-1664991 Medicago truncatula
Medtr2g008840 10.0kb upstream 10.0kb upstream 23446 true chr2: 1636546-1659991 Medicago truncatula
Medtr2g008840 10.0kb upstream 10.0kb upstream 10000 false chr2: 1636546-1646545 Medicago truncatula
Medtr2g008840 10.0kb downstream 10.0kb downstream 23446 true chr2: 1646546-1669991 Medicago truncatula
Medtr2g008840 10.0kb downstream 10.0kb downstream 10000 false chr2: 1659992-1669991 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310987 5265 Fabidae View MSA
124071259 5270 Rosid View MSA
123742819 5271 Pentapetalae View MSA
122795418 5272 Eudicot View MSA
122048924 5273 Angiosperm View MSA
121350175 5274 Embryophyte View MSA
123427695 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.718       High
cufflinks 1.793        
cufflinks 1.892        
cufflinks 1.0       Low
cufflinks 1.561        
cufflinks 1.01       Low
cufflinks 1.945        
cufflinks 1.624        
cufflinks 1.357        

0 Strain