Gene : Medtr1g111560 M. truncatula Mt4.0v1
Defline:  (1 of 1) KOG1999 - RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 Description:  transcription elongation factor Spt5-like protein, putative
Genomic Order:  6351 Name:  ? Medtr1g111560
Secondary Identifier:  ? PAC:31094721
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g111560 0.5kb upstream 0.5kb upstream 8413 true chr1: 50409008-50417420 Medicago truncatula
Medtr1g111560 0.5kb upstream 0.5kb upstream 500 false chr1: 50409008-50409507 Medicago truncatula
Medtr1g111560 0.5kb downstream 0.5kb downstream 8413 true chr1: 50409508-50417920 Medicago truncatula
Medtr1g111560 0.5kb downstream 0.5kb downstream 500 false chr1: 50417421-50417920 Medicago truncatula
Medtr1g111560 1.0kb upstream 1.0kb upstream 8913 true chr1: 50408508-50417420 Medicago truncatula
Medtr1g111560 1.0kb upstream 1.0kb upstream 1000 false chr1: 50408508-50409507 Medicago truncatula
Medtr1g111560 1.0kb downstream 1.0kb downstream 8913 true chr1: 50409508-50418420 Medicago truncatula
Medtr1g111560 1.0kb downstream 1.0kb downstream 1000 false chr1: 50417421-50418420 Medicago truncatula
Medtr1g111560 2.0kb upstream 2.0kb upstream 9913 true chr1: 50407508-50417420 Medicago truncatula
Medtr1g111560 2.0kb upstream 2.0kb upstream 2000 false chr1: 50407508-50409507 Medicago truncatula
Medtr1g111560 2.0kb downstream 2.0kb downstream 9913 true chr1: 50409508-50419420 Medicago truncatula
Medtr1g111560 2.0kb downstream 2.0kb downstream 2000 false chr1: 50417421-50419420 Medicago truncatula
Medtr1g111560 5.0kb upstream 5.0kb upstream 12913 true chr1: 50404508-50417420 Medicago truncatula
Medtr1g111560 5.0kb upstream 5.0kb upstream 5000 false chr1: 50404508-50409507 Medicago truncatula
Medtr1g111560 5.0kb downstream 5.0kb downstream 12913 true chr1: 50409508-50422420 Medicago truncatula
Medtr1g111560 5.0kb downstream 5.0kb downstream 5000 false chr1: 50417421-50422420 Medicago truncatula
Medtr1g111560 10.0kb upstream 10.0kb upstream 17913 true chr1: 50399508-50417420 Medicago truncatula
Medtr1g111560 10.0kb upstream 10.0kb upstream 10000 false chr1: 50399508-50409507 Medicago truncatula
Medtr1g111560 10.0kb downstream 10.0kb downstream 17913 true chr1: 50409508-50427420 Medicago truncatula
Medtr1g111560 10.0kb downstream 10.0kb downstream 10000 false chr1: 50417421-50427420 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312354 5265 Fabidae View MSA
124074331 5270 Rosid View MSA
123745938 5271 Pentapetalae View MSA
122796587 5272 Eudicot View MSA
122051188 5273 Angiosperm View MSA
121344131 5274 Embryophyte View MSA
123426539 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.342     High  
cufflinks 10.163     High  
cufflinks 10.828     High  
cufflinks 5.48       Low
cufflinks 11.895     High  
cufflinks 3.795       Low
cufflinks 7.74        
cufflinks 9.379     High  
cufflinks 10.212        

0 Strain