Gene : Medtr1g111390 M. truncatula Mt4.0v1
Defline:  (1 of 4) PTHR12608 - TRANSMEMBRANE PROTEIN HTP-1 RELATED Description:  transmembrane protein PFT27
Genomic Order:  6340 Name:  ? Medtr1g111390
Secondary Identifier:  ? PAC:31092798
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g111390 0.5kb upstream 0.5kb upstream 4839 true chr1: 50328005-50332843 Medicago truncatula
Medtr1g111390 0.5kb upstream 0.5kb upstream 500 false chr1: 50328005-50328504 Medicago truncatula
Medtr1g111390 0.5kb downstream 0.5kb downstream 4839 true chr1: 50328505-50333343 Medicago truncatula
Medtr1g111390 0.5kb downstream 0.5kb downstream 500 false chr1: 50332844-50333343 Medicago truncatula
Medtr1g111390 1.0kb upstream 1.0kb upstream 5339 true chr1: 50327505-50332843 Medicago truncatula
Medtr1g111390 1.0kb upstream 1.0kb upstream 1000 false chr1: 50327505-50328504 Medicago truncatula
Medtr1g111390 1.0kb downstream 1.0kb downstream 5339 true chr1: 50328505-50333843 Medicago truncatula
Medtr1g111390 1.0kb downstream 1.0kb downstream 1000 false chr1: 50332844-50333843 Medicago truncatula
Medtr1g111390 2.0kb upstream 2.0kb upstream 6339 true chr1: 50326505-50332843 Medicago truncatula
Medtr1g111390 2.0kb upstream 2.0kb upstream 2000 false chr1: 50326505-50328504 Medicago truncatula
Medtr1g111390 2.0kb downstream 2.0kb downstream 6339 true chr1: 50328505-50334843 Medicago truncatula
Medtr1g111390 2.0kb downstream 2.0kb downstream 2000 false chr1: 50332844-50334843 Medicago truncatula
Medtr1g111390 5.0kb upstream 5.0kb upstream 9339 true chr1: 50323505-50332843 Medicago truncatula
Medtr1g111390 5.0kb upstream 5.0kb upstream 5000 false chr1: 50323505-50328504 Medicago truncatula
Medtr1g111390 5.0kb downstream 5.0kb downstream 9339 true chr1: 50328505-50337843 Medicago truncatula
Medtr1g111390 5.0kb downstream 5.0kb downstream 5000 false chr1: 50332844-50337843 Medicago truncatula
Medtr1g111390 10.0kb upstream 10.0kb upstream 14339 true chr1: 50318505-50332843 Medicago truncatula
Medtr1g111390 10.0kb upstream 10.0kb upstream 10000 false chr1: 50318505-50328504 Medicago truncatula
Medtr1g111390 10.0kb downstream 10.0kb downstream 14339 true chr1: 50328505-50342843 Medicago truncatula
Medtr1g111390 10.0kb downstream 10.0kb downstream 10000 false chr1: 50332844-50342843 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300846 5265 Fabidae View MSA
124060465 5270 Rosid View MSA
123745262 5271 Pentapetalae View MSA
122786171 5272 Eudicot View MSA
122046225 5273 Angiosperm View MSA
121344721 5274 Embryophyte View MSA
123428725 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 35.643     High High
cufflinks 19.149     High  
cufflinks 41.124     High High
cufflinks 22.773     High  
cufflinks 23.315     High  
cufflinks 10.281       Low
cufflinks 17.467     High  
cufflinks 28.613     High  
cufflinks 17.615     High  

0 Strain