Gene : Medtr1g113010 M. truncatula Mt4.0v1
Defline:  (1 of 43) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Description:  PPR containing plant-like protein
Genomic Order:  6455 Name:  ? Medtr1g113010
Secondary Identifier:  ? PAC:31093206
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g113010 0.5kb upstream 0.5kb upstream 2661 true chr1: 51276635-51279295 Medicago truncatula
Medtr1g113010 0.5kb upstream 0.5kb upstream 500 false chr1: 51276635-51277134 Medicago truncatula
Medtr1g113010 0.5kb downstream 0.5kb downstream 2661 true chr1: 51277135-51279795 Medicago truncatula
Medtr1g113010 0.5kb downstream 0.5kb downstream 500 false chr1: 51279296-51279795 Medicago truncatula
Medtr1g113010 1.0kb upstream 1.0kb upstream 3161 true chr1: 51276135-51279295 Medicago truncatula
Medtr1g113010 1.0kb upstream 1.0kb upstream 1000 false chr1: 51276135-51277134 Medicago truncatula
Medtr1g113010 1.0kb downstream 1.0kb downstream 3161 true chr1: 51277135-51280295 Medicago truncatula
Medtr1g113010 1.0kb downstream 1.0kb downstream 1000 false chr1: 51279296-51280295 Medicago truncatula
Medtr1g113010 2.0kb upstream 2.0kb upstream 4161 true chr1: 51275135-51279295 Medicago truncatula
Medtr1g113010 2.0kb upstream 2.0kb upstream 2000 false chr1: 51275135-51277134 Medicago truncatula
Medtr1g113010 2.0kb downstream 2.0kb downstream 4161 true chr1: 51277135-51281295 Medicago truncatula
Medtr1g113010 2.0kb downstream 2.0kb downstream 2000 false chr1: 51279296-51281295 Medicago truncatula
Medtr1g113010 5.0kb upstream 5.0kb upstream 7161 true chr1: 51272135-51279295 Medicago truncatula
Medtr1g113010 5.0kb upstream 5.0kb upstream 5000 false chr1: 51272135-51277134 Medicago truncatula
Medtr1g113010 5.0kb downstream 5.0kb downstream 7161 true chr1: 51277135-51284295 Medicago truncatula
Medtr1g113010 5.0kb downstream 5.0kb downstream 5000 false chr1: 51279296-51284295 Medicago truncatula
Medtr1g113010 10.0kb upstream 10.0kb upstream 12161 true chr1: 51267135-51279295 Medicago truncatula
Medtr1g113010 10.0kb upstream 10.0kb upstream 10000 false chr1: 51267135-51277134 Medicago truncatula
Medtr1g113010 10.0kb downstream 10.0kb downstream 12161 true chr1: 51277135-51289295 Medicago truncatula
Medtr1g113010 10.0kb downstream 10.0kb downstream 10000 false chr1: 51279296-51289295 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300709 5265 Fabidae View MSA
124060522 5270 Rosid View MSA
123738847 5271 Pentapetalae View MSA
122790244 5272 Eudicot View MSA
122041559 5273 Angiosperm View MSA
121309863 5274 Embryophyte View MSA
123347506 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.159        
cufflinks 0.96        
cufflinks 1.138        
cufflinks 1.823        
cufflinks 2.472       High
cufflinks 0.787       Low
cufflinks 1.806        
cufflinks 0.657       Low
cufflinks 2.685       High

0 Strain