Gene : Medtr1g114320 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR22763:SF5 - E3 UBIQUITIN-PROTEIN LIGASE CIP8 Description:  E3 ubiquitin-protein ligase RING1-like protein
Genomic Order:  6501 Name:  ? Medtr1g114320
Secondary Identifier:  ? PAC:31099908
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-7511 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g114320 0.5kb upstream 0.5kb upstream 3009 true chr1: 51590258-51593266 Medicago truncatula
Medtr1g114320 0.5kb upstream 0.5kb upstream 500 false chr1: 51590258-51590757 Medicago truncatula
Medtr1g114320 0.5kb downstream 0.5kb downstream 3009 true chr1: 51590758-51593766 Medicago truncatula
Medtr1g114320 0.5kb downstream 0.5kb downstream 500 false chr1: 51593267-51593766 Medicago truncatula
Medtr1g114320 1.0kb upstream 1.0kb upstream 3509 true chr1: 51589758-51593266 Medicago truncatula
Medtr1g114320 1.0kb upstream 1.0kb upstream 1000 false chr1: 51589758-51590757 Medicago truncatula
Medtr1g114320 1.0kb downstream 1.0kb downstream 3509 true chr1: 51590758-51594266 Medicago truncatula
Medtr1g114320 1.0kb downstream 1.0kb downstream 1000 false chr1: 51593267-51594266 Medicago truncatula
Medtr1g114320 2.0kb upstream 2.0kb upstream 4509 true chr1: 51588758-51593266 Medicago truncatula
Medtr1g114320 2.0kb upstream 2.0kb upstream 2000 false chr1: 51588758-51590757 Medicago truncatula
Medtr1g114320 2.0kb downstream 2.0kb downstream 4509 true chr1: 51590758-51595266 Medicago truncatula
Medtr1g114320 2.0kb downstream 2.0kb downstream 2000 false chr1: 51593267-51595266 Medicago truncatula
Medtr1g114320 5.0kb upstream 5.0kb upstream 7509 true chr1: 51585758-51593266 Medicago truncatula
Medtr1g114320 5.0kb upstream 5.0kb upstream 5000 false chr1: 51585758-51590757 Medicago truncatula
Medtr1g114320 5.0kb downstream 5.0kb downstream 7509 true chr1: 51590758-51598266 Medicago truncatula
Medtr1g114320 5.0kb downstream 5.0kb downstream 5000 false chr1: 51593267-51598266 Medicago truncatula
Medtr1g114320 10.0kb upstream 10.0kb upstream 12509 true chr1: 51580758-51593266 Medicago truncatula
Medtr1g114320 10.0kb upstream 10.0kb upstream 10000 false chr1: 51580758-51590757 Medicago truncatula
Medtr1g114320 10.0kb downstream 10.0kb downstream 12509 true chr1: 51590758-51603266 Medicago truncatula
Medtr1g114320 10.0kb downstream 10.0kb downstream 10000 false chr1: 51593267-51603266 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296707 5265 Fabidae View MSA
124062824 5270 Rosid View MSA
123753393 5271 Pentapetalae View MSA
122788391 5272 Eudicot View MSA
122050385 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.822        
cufflinks 1.702        
cufflinks 1.875        
cufflinks 6.671       High
cufflinks 1.81        
cufflinks 3.008        
cufflinks 2.236        
cufflinks 1.828        
cufflinks 3.233        

0 Strain