Gene : Medtr1g115475 M. truncatula Mt4.0v1
Defline:  (1 of 3) 3.2.1.52 - Beta-N-acetylhexosaminidase / N-acetyl-beta-glucosaminidase Description:  glycoside hydrolase family 20 domain protein
Genomic Order:  6588 Name:  ? Medtr1g115475
Secondary Identifier:  ? PAC:31092669
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6902 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g115475 0.5kb upstream 0.5kb upstream 6355 true chr1: 52155998-52162352 Medicago truncatula
Medtr1g115475 0.5kb upstream 0.5kb upstream 500 false chr1: 52161853-52162352 Medicago truncatula
Medtr1g115475 0.5kb downstream 0.5kb downstream 6355 true chr1: 52155498-52161852 Medicago truncatula
Medtr1g115475 0.5kb downstream 0.5kb downstream 500 false chr1: 52155498-52155997 Medicago truncatula
Medtr1g115475 1.0kb upstream 1.0kb upstream 6855 true chr1: 52155998-52162852 Medicago truncatula
Medtr1g115475 1.0kb upstream 1.0kb upstream 1000 false chr1: 52161853-52162852 Medicago truncatula
Medtr1g115475 1.0kb downstream 1.0kb downstream 6855 true chr1: 52154998-52161852 Medicago truncatula
Medtr1g115475 1.0kb downstream 1.0kb downstream 1000 false chr1: 52154998-52155997 Medicago truncatula
Medtr1g115475 2.0kb upstream 2.0kb upstream 7855 true chr1: 52155998-52163852 Medicago truncatula
Medtr1g115475 2.0kb upstream 2.0kb upstream 2000 false chr1: 52161853-52163852 Medicago truncatula
Medtr1g115475 2.0kb downstream 2.0kb downstream 7855 true chr1: 52153998-52161852 Medicago truncatula
Medtr1g115475 2.0kb downstream 2.0kb downstream 2000 false chr1: 52153998-52155997 Medicago truncatula
Medtr1g115475 5.0kb upstream 5.0kb upstream 10855 true chr1: 52155998-52166852 Medicago truncatula
Medtr1g115475 5.0kb upstream 5.0kb upstream 5000 false chr1: 52161853-52166852 Medicago truncatula
Medtr1g115475 5.0kb downstream 5.0kb downstream 10855 true chr1: 52150998-52161852 Medicago truncatula
Medtr1g115475 5.0kb downstream 5.0kb downstream 5000 false chr1: 52150998-52155997 Medicago truncatula
Medtr1g115475 10.0kb upstream 10.0kb upstream 15855 true chr1: 52155998-52171852 Medicago truncatula
Medtr1g115475 10.0kb upstream 10.0kb upstream 10000 false chr1: 52161853-52171852 Medicago truncatula
Medtr1g115475 10.0kb downstream 10.0kb downstream 15855 true chr1: 52145998-52161852 Medicago truncatula
Medtr1g115475 10.0kb downstream 10.0kb downstream 10000 false chr1: 52145998-52155997 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310908 5265 Fabidae View MSA
124068580 5270 Rosid View MSA
123738133 5271 Pentapetalae View MSA
122790534 5272 Eudicot View MSA
122047167 5273 Angiosperm View MSA
121346826 5274 Embryophyte View MSA
123428053 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.258       Low
cufflinks 0.573        
cufflinks 0.352        
cufflinks 1.178        
cufflinks 0.345        
cufflinks 0.675        
cufflinks 1.724       High
cufflinks 0.539        
cufflinks 3.631       High

0 Strain