Gene : Medtr1g115490 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR31871:SF10 - GENOMIC DNA, CHROMOSOME 3, TAC CLONE:K5K13 Description:  hypothetical protein
Genomic Order:  6590 Name:  ? Medtr1g115490
Secondary Identifier:  ? PAC:31094809
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g115490 0.5kb upstream 0.5kb upstream 2921 true chr1: 52182595-52185515 Medicago truncatula
Medtr1g115490 0.5kb upstream 0.5kb upstream 500 false chr1: 52182595-52183094 Medicago truncatula
Medtr1g115490 0.5kb downstream 0.5kb downstream 2921 true chr1: 52183095-52186015 Medicago truncatula
Medtr1g115490 0.5kb downstream 0.5kb downstream 500 false chr1: 52185516-52186015 Medicago truncatula
Medtr1g115490 1.0kb upstream 1.0kb upstream 3421 true chr1: 52182095-52185515 Medicago truncatula
Medtr1g115490 1.0kb upstream 1.0kb upstream 1000 false chr1: 52182095-52183094 Medicago truncatula
Medtr1g115490 1.0kb downstream 1.0kb downstream 3421 true chr1: 52183095-52186515 Medicago truncatula
Medtr1g115490 1.0kb downstream 1.0kb downstream 1000 false chr1: 52185516-52186515 Medicago truncatula
Medtr1g115490 2.0kb upstream 2.0kb upstream 4421 true chr1: 52181095-52185515 Medicago truncatula
Medtr1g115490 2.0kb upstream 2.0kb upstream 2000 false chr1: 52181095-52183094 Medicago truncatula
Medtr1g115490 2.0kb downstream 2.0kb downstream 4421 true chr1: 52183095-52187515 Medicago truncatula
Medtr1g115490 2.0kb downstream 2.0kb downstream 2000 false chr1: 52185516-52187515 Medicago truncatula
Medtr1g115490 5.0kb upstream 5.0kb upstream 7421 true chr1: 52178095-52185515 Medicago truncatula
Medtr1g115490 5.0kb upstream 5.0kb upstream 5000 false chr1: 52178095-52183094 Medicago truncatula
Medtr1g115490 5.0kb downstream 5.0kb downstream 7421 true chr1: 52183095-52190515 Medicago truncatula
Medtr1g115490 5.0kb downstream 5.0kb downstream 5000 false chr1: 52185516-52190515 Medicago truncatula
Medtr1g115490 10.0kb upstream 10.0kb upstream 12421 true chr1: 52173095-52185515 Medicago truncatula
Medtr1g115490 10.0kb upstream 10.0kb upstream 10000 false chr1: 52173095-52183094 Medicago truncatula
Medtr1g115490 10.0kb downstream 10.0kb downstream 12421 true chr1: 52183095-52195515 Medicago truncatula
Medtr1g115490 10.0kb downstream 10.0kb downstream 10000 false chr1: 52185516-52195515 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314737 5265 Fabidae View MSA
124070789 5270 Rosid View MSA
123747492 5271 Pentapetalae View MSA
122795039 5272 Eudicot View MSA
122043868 5273 Angiosperm View MSA
121310203 5274 Embryophyte View MSA
123347760 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.29        
cufflinks 0.17       Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.238        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.271        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain