Gene : Medtr1g115525 M. truncatula Mt4.0v1
Defline:  (1 of 4) PTHR10644:SF1 - SPLICING FACTOR 3B SUBUNIT 3 Description:  splicing factor 3B subunit-like protein
Genomic Order:  6596 Name:  ? Medtr1g115525
Secondary Identifier:  ? PAC:31098213
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g115525 0.5kb upstream 0.5kb upstream 5465 true chr1: 52207712-52213176 Medicago truncatula
Medtr1g115525 0.5kb upstream 0.5kb upstream 500 false chr1: 52207712-52208211 Medicago truncatula
Medtr1g115525 0.5kb downstream 0.5kb downstream 5465 true chr1: 52208212-52213676 Medicago truncatula
Medtr1g115525 0.5kb downstream 0.5kb downstream 500 false chr1: 52213177-52213676 Medicago truncatula
Medtr1g115525 1.0kb upstream 1.0kb upstream 5965 true chr1: 52207212-52213176 Medicago truncatula
Medtr1g115525 1.0kb upstream 1.0kb upstream 1000 false chr1: 52207212-52208211 Medicago truncatula
Medtr1g115525 1.0kb downstream 1.0kb downstream 5965 true chr1: 52208212-52214176 Medicago truncatula
Medtr1g115525 1.0kb downstream 1.0kb downstream 1000 false chr1: 52213177-52214176 Medicago truncatula
Medtr1g115525 2.0kb upstream 2.0kb upstream 6965 true chr1: 52206212-52213176 Medicago truncatula
Medtr1g115525 2.0kb upstream 2.0kb upstream 2000 false chr1: 52206212-52208211 Medicago truncatula
Medtr1g115525 2.0kb downstream 2.0kb downstream 6965 true chr1: 52208212-52215176 Medicago truncatula
Medtr1g115525 2.0kb downstream 2.0kb downstream 2000 false chr1: 52213177-52215176 Medicago truncatula
Medtr1g115525 5.0kb upstream 5.0kb upstream 9965 true chr1: 52203212-52213176 Medicago truncatula
Medtr1g115525 5.0kb upstream 5.0kb upstream 5000 false chr1: 52203212-52208211 Medicago truncatula
Medtr1g115525 5.0kb downstream 5.0kb downstream 9965 true chr1: 52208212-52218176 Medicago truncatula
Medtr1g115525 5.0kb downstream 5.0kb downstream 5000 false chr1: 52213177-52218176 Medicago truncatula
Medtr1g115525 10.0kb upstream 10.0kb upstream 14965 true chr1: 52198212-52213176 Medicago truncatula
Medtr1g115525 10.0kb upstream 10.0kb upstream 10000 false chr1: 52198212-52208211 Medicago truncatula
Medtr1g115525 10.0kb downstream 10.0kb downstream 14965 true chr1: 52208212-52223176 Medicago truncatula
Medtr1g115525 10.0kb downstream 10.0kb downstream 10000 false chr1: 52213177-52223176 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305797 5265 Fabidae View MSA
124069298 5270 Rosid View MSA
123746995 5271 Pentapetalae View MSA
122794843 5272 Eudicot View MSA
122048690 5273 Angiosperm View MSA
121348178 5274 Embryophyte View MSA
123426142 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.122        
cufflinks 11.986     High  
cufflinks 10.86     High  
cufflinks 2.769       Low
cufflinks 16.618     High High
cufflinks 1.741       Low
cufflinks 4.703        
cufflinks 9.872     High  
cufflinks 6.191        

0 Strain