Gene : Medtr1g115295 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR11946:SF89 - METHIONYL-TRNA SYNTHETASE Description:  methionyl-tRNA synthetase
Genomic Order:  6561 Name:  ? Medtr1g115295
Secondary Identifier:  ? PAC:31097168
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula TRNA-CHARGING-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g115295 0.5kb upstream 0.5kb upstream 8492 true chr1: 52001896-52010387 Medicago truncatula
Medtr1g115295 0.5kb upstream 0.5kb upstream 500 false chr1: 52009888-52010387 Medicago truncatula
Medtr1g115295 0.5kb downstream 0.5kb downstream 8492 true chr1: 52001396-52009887 Medicago truncatula
Medtr1g115295 0.5kb downstream 0.5kb downstream 500 false chr1: 52001396-52001895 Medicago truncatula
Medtr1g115295 1.0kb upstream 1.0kb upstream 8992 true chr1: 52001896-52010887 Medicago truncatula
Medtr1g115295 1.0kb upstream 1.0kb upstream 1000 false chr1: 52009888-52010887 Medicago truncatula
Medtr1g115295 1.0kb downstream 1.0kb downstream 8992 true chr1: 52000896-52009887 Medicago truncatula
Medtr1g115295 1.0kb downstream 1.0kb downstream 1000 false chr1: 52000896-52001895 Medicago truncatula
Medtr1g115295 2.0kb upstream 2.0kb upstream 9992 true chr1: 52001896-52011887 Medicago truncatula
Medtr1g115295 2.0kb upstream 2.0kb upstream 2000 false chr1: 52009888-52011887 Medicago truncatula
Medtr1g115295 2.0kb downstream 2.0kb downstream 9992 true chr1: 51999896-52009887 Medicago truncatula
Medtr1g115295 2.0kb downstream 2.0kb downstream 2000 false chr1: 51999896-52001895 Medicago truncatula
Medtr1g115295 5.0kb upstream 5.0kb upstream 12992 true chr1: 52001896-52014887 Medicago truncatula
Medtr1g115295 5.0kb upstream 5.0kb upstream 5000 false chr1: 52009888-52014887 Medicago truncatula
Medtr1g115295 5.0kb downstream 5.0kb downstream 12992 true chr1: 51996896-52009887 Medicago truncatula
Medtr1g115295 5.0kb downstream 5.0kb downstream 5000 false chr1: 51996896-52001895 Medicago truncatula
Medtr1g115295 10.0kb upstream 10.0kb upstream 17992 true chr1: 52001896-52019887 Medicago truncatula
Medtr1g115295 10.0kb upstream 10.0kb upstream 10000 false chr1: 52009888-52019887 Medicago truncatula
Medtr1g115295 10.0kb downstream 10.0kb downstream 17992 true chr1: 51991896-52009887 Medicago truncatula
Medtr1g115295 10.0kb downstream 10.0kb downstream 10000 false chr1: 51991896-52001895 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303367 5265 Fabidae View MSA
124065458 5270 Rosid View MSA
123752968 5271 Pentapetalae View MSA
122787831 5272 Eudicot View MSA
122046373 5273 Angiosperm View MSA
121347151 5274 Embryophyte View MSA
123428788 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.411        
cufflinks 2.82        
cufflinks 1.909        
cufflinks 0.176        
cufflinks 5.348       High
cufflinks 0.015     Low Low
cufflinks 0.258        
cufflinks 2.85        
cufflinks 0.321        

0 Strain