Gene : Medtr1g116370 M. truncatula Mt4.0v1
Defline:  (1 of 4) PTHR12741:SF21 - CALLOSE SYNTHASE 3 Description:  glucan synthase-like protein
Genomic Order:  6661 Name:  ? Medtr1g116370
Secondary Identifier:  ? PAC:31093561
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6773 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1g116370 0.5kb upstream 0.5kb upstream 24542 true chr1: 52595438-52619979 Medicago truncatula
Medtr1g116370 0.5kb upstream 0.5kb upstream 500 false chr1: 52595438-52595937 Medicago truncatula
Medtr1g116370 0.5kb downstream 0.5kb downstream 24542 true chr1: 52595938-52620479 Medicago truncatula
Medtr1g116370 0.5kb downstream 0.5kb downstream 500 false chr1: 52619980-52620479 Medicago truncatula
Medtr1g116370 1.0kb upstream 1.0kb upstream 25042 true chr1: 52594938-52619979 Medicago truncatula
Medtr1g116370 1.0kb upstream 1.0kb upstream 1000 false chr1: 52594938-52595937 Medicago truncatula
Medtr1g116370 1.0kb downstream 1.0kb downstream 25042 true chr1: 52595938-52620979 Medicago truncatula
Medtr1g116370 1.0kb downstream 1.0kb downstream 1000 false chr1: 52619980-52620979 Medicago truncatula
Medtr1g116370 2.0kb upstream 2.0kb upstream 26042 true chr1: 52593938-52619979 Medicago truncatula
Medtr1g116370 2.0kb upstream 2.0kb upstream 2000 false chr1: 52593938-52595937 Medicago truncatula
Medtr1g116370 2.0kb downstream 2.0kb downstream 26042 true chr1: 52595938-52621979 Medicago truncatula
Medtr1g116370 2.0kb downstream 2.0kb downstream 2000 false chr1: 52619980-52621979 Medicago truncatula
Medtr1g116370 5.0kb upstream 5.0kb upstream 29042 true chr1: 52590938-52619979 Medicago truncatula
Medtr1g116370 5.0kb upstream 5.0kb upstream 5000 false chr1: 52590938-52595937 Medicago truncatula
Medtr1g116370 5.0kb downstream 5.0kb downstream 29042 true chr1: 52595938-52624979 Medicago truncatula
Medtr1g116370 5.0kb downstream 5.0kb downstream 5000 false chr1: 52619980-52624979 Medicago truncatula
Medtr1g116370 10.0kb upstream 10.0kb upstream 34042 true chr1: 52585938-52619979 Medicago truncatula
Medtr1g116370 10.0kb upstream 10.0kb upstream 10000 false chr1: 52585938-52595937 Medicago truncatula
Medtr1g116370 10.0kb downstream 10.0kb downstream 34042 true chr1: 52595938-52629979 Medicago truncatula
Medtr1g116370 10.0kb downstream 10.0kb downstream 10000 false chr1: 52619980-52629979 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301991 5265 Fabidae View MSA
124072639 5270 Rosid View MSA
123745171 5271 Pentapetalae View MSA
122788947 5272 Eudicot View MSA
122050431 5273 Angiosperm View MSA
121349066 5274 Embryophyte View MSA
123428420 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.253       High
cufflinks 0.065     Low  
cufflinks 0.04     Low  
cufflinks 0.07        
cufflinks 0.033     Low Low
cufflinks 0.035     Low  
cufflinks 0.252       High
cufflinks 0.054     Low  
cufflinks 0.247       High

0 Strain