Gene : Medtr2g045420 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR13683:SF296 - ASPARTYL PROTEASE FAMILY PROTEIN Description:  fungal proteinase A, aspartic proteinase superfamily protein
Genomic Order:  2709 Name:  ? Medtr2g045420
Secondary Identifier:  ? PAC:31068930
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g045420 0.5kb upstream 0.5kb upstream 4643 true chr2: 19939112-19943754 Medicago truncatula
Medtr2g045420 0.5kb upstream 0.5kb upstream 500 false chr2: 19943255-19943754 Medicago truncatula
Medtr2g045420 0.5kb downstream 0.5kb downstream 4643 true chr2: 19938612-19943254 Medicago truncatula
Medtr2g045420 0.5kb downstream 0.5kb downstream 500 false chr2: 19938612-19939111 Medicago truncatula
Medtr2g045420 1.0kb upstream 1.0kb upstream 5143 true chr2: 19939112-19944254 Medicago truncatula
Medtr2g045420 1.0kb upstream 1.0kb upstream 1000 false chr2: 19943255-19944254 Medicago truncatula
Medtr2g045420 1.0kb downstream 1.0kb downstream 5143 true chr2: 19938112-19943254 Medicago truncatula
Medtr2g045420 1.0kb downstream 1.0kb downstream 1000 false chr2: 19938112-19939111 Medicago truncatula
Medtr2g045420 2.0kb upstream 2.0kb upstream 6143 true chr2: 19939112-19945254 Medicago truncatula
Medtr2g045420 2.0kb upstream 2.0kb upstream 2000 false chr2: 19943255-19945254 Medicago truncatula
Medtr2g045420 2.0kb downstream 2.0kb downstream 6143 true chr2: 19937112-19943254 Medicago truncatula
Medtr2g045420 2.0kb downstream 2.0kb downstream 2000 false chr2: 19937112-19939111 Medicago truncatula
Medtr2g045420 5.0kb upstream 5.0kb upstream 9143 true chr2: 19939112-19948254 Medicago truncatula
Medtr2g045420 5.0kb upstream 5.0kb upstream 5000 false chr2: 19943255-19948254 Medicago truncatula
Medtr2g045420 5.0kb downstream 5.0kb downstream 9143 true chr2: 19934112-19943254 Medicago truncatula
Medtr2g045420 5.0kb downstream 5.0kb downstream 5000 false chr2: 19934112-19939111 Medicago truncatula
Medtr2g045420 10.0kb upstream 10.0kb upstream 14143 true chr2: 19939112-19953254 Medicago truncatula
Medtr2g045420 10.0kb upstream 10.0kb upstream 10000 false chr2: 19943255-19953254 Medicago truncatula
Medtr2g045420 10.0kb downstream 10.0kb downstream 14143 true chr2: 19929112-19943254 Medicago truncatula
Medtr2g045420 10.0kb downstream 10.0kb downstream 10000 false chr2: 19929112-19939111 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121780043 5273 Angiosperm View MSA
122311661 5265 Fabidae View MSA
124071121 5270 Rosid View MSA
123744877 5271 Pentapetalae View MSA
122771281 5272 Eudicot View MSA
121051677 5274 Embryophyte View MSA
123428778 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.152        
cufflinks 3.665        
cufflinks 5.276       High
cufflinks 0.685       Low
cufflinks 3.342        
cufflinks 1.148        
cufflinks 1.739        
cufflinks 3.938        
cufflinks 0.404       Low

0 Strain