Gene : Medtr2g048390 M. truncatula Mt4.0v1
Defline:  (1 of 21) PF00651//PF03000 - BTB/POZ domain (BTB) // NPH3 family (NPH3) Description:  phototropic-responsive NPH3 family protein
Genomic Order:  2836 Name:  ? Medtr2g048390
Secondary Identifier:  ? PAC:31064266
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g048390 0.5kb upstream 0.5kb upstream 3548 true chr2: 21307969-21311516 Medicago truncatula
Medtr2g048390 0.5kb upstream 0.5kb upstream 500 false chr2: 21311017-21311516 Medicago truncatula
Medtr2g048390 0.5kb downstream 0.5kb downstream 3548 true chr2: 21307469-21311016 Medicago truncatula
Medtr2g048390 0.5kb downstream 0.5kb downstream 500 false chr2: 21307469-21307968 Medicago truncatula
Medtr2g048390 1.0kb upstream 1.0kb upstream 4048 true chr2: 21307969-21312016 Medicago truncatula
Medtr2g048390 1.0kb upstream 1.0kb upstream 1000 false chr2: 21311017-21312016 Medicago truncatula
Medtr2g048390 1.0kb downstream 1.0kb downstream 4048 true chr2: 21306969-21311016 Medicago truncatula
Medtr2g048390 1.0kb downstream 1.0kb downstream 1000 false chr2: 21306969-21307968 Medicago truncatula
Medtr2g048390 2.0kb upstream 2.0kb upstream 5048 true chr2: 21307969-21313016 Medicago truncatula
Medtr2g048390 2.0kb upstream 2.0kb upstream 2000 false chr2: 21311017-21313016 Medicago truncatula
Medtr2g048390 2.0kb downstream 2.0kb downstream 5048 true chr2: 21305969-21311016 Medicago truncatula
Medtr2g048390 2.0kb downstream 2.0kb downstream 2000 false chr2: 21305969-21307968 Medicago truncatula
Medtr2g048390 5.0kb upstream 5.0kb upstream 8048 true chr2: 21307969-21316016 Medicago truncatula
Medtr2g048390 5.0kb upstream 5.0kb upstream 5000 false chr2: 21311017-21316016 Medicago truncatula
Medtr2g048390 5.0kb downstream 5.0kb downstream 8048 true chr2: 21302969-21311016 Medicago truncatula
Medtr2g048390 5.0kb downstream 5.0kb downstream 5000 false chr2: 21302969-21307968 Medicago truncatula
Medtr2g048390 10.0kb upstream 10.0kb upstream 13048 true chr2: 21307969-21321016 Medicago truncatula
Medtr2g048390 10.0kb upstream 10.0kb upstream 10000 false chr2: 21311017-21321016 Medicago truncatula
Medtr2g048390 10.0kb downstream 10.0kb downstream 13048 true chr2: 21297969-21311016 Medicago truncatula
Medtr2g048390 10.0kb downstream 10.0kb downstream 10000 false chr2: 21297969-21307968 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302625 5265 Fabidae View MSA
124066355 5270 Rosid View MSA
123740416 5271 Pentapetalae View MSA
122793114 5272 Eudicot View MSA
122046069 5273 Angiosperm View MSA
121347106 5274 Embryophyte View MSA
123380493 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.273        
cufflinks 3.969        
cufflinks 4.871        
cufflinks 2.622        
cufflinks 5.606        
cufflinks 0.759       Low
cufflinks 5.92        
cufflinks 3.918        
cufflinks 7.721       High

0 Strain