Gene : Medtr2g048375 M. truncatula Mt4.0v1
Description:  phototropic-responsive NPH3 family protein Genomic Order:  2834
Name:  ? Medtr2g048375 Secondary Identifier:  ? PAC:31062788
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g048375 0.5kb upstream 0.5kb upstream 1040 true chr2: 21305450-21306489 Medicago truncatula
Medtr2g048375 0.5kb upstream 0.5kb upstream 500 false chr2: 21305990-21306489 Medicago truncatula
Medtr2g048375 0.5kb downstream 0.5kb downstream 1040 true chr2: 21304950-21305989 Medicago truncatula
Medtr2g048375 0.5kb downstream 0.5kb downstream 500 false chr2: 21304950-21305449 Medicago truncatula
Medtr2g048375 1.0kb upstream 1.0kb upstream 1540 true chr2: 21305450-21306989 Medicago truncatula
Medtr2g048375 1.0kb upstream 1.0kb upstream 1000 false chr2: 21305990-21306989 Medicago truncatula
Medtr2g048375 1.0kb downstream 1.0kb downstream 1540 true chr2: 21304450-21305989 Medicago truncatula
Medtr2g048375 1.0kb downstream 1.0kb downstream 1000 false chr2: 21304450-21305449 Medicago truncatula
Medtr2g048375 2.0kb upstream 2.0kb upstream 2540 true chr2: 21305450-21307989 Medicago truncatula
Medtr2g048375 2.0kb upstream 2.0kb upstream 2000 false chr2: 21305990-21307989 Medicago truncatula
Medtr2g048375 2.0kb downstream 2.0kb downstream 2540 true chr2: 21303450-21305989 Medicago truncatula
Medtr2g048375 2.0kb downstream 2.0kb downstream 2000 false chr2: 21303450-21305449 Medicago truncatula
Medtr2g048375 5.0kb upstream 5.0kb upstream 5540 true chr2: 21305450-21310989 Medicago truncatula
Medtr2g048375 5.0kb upstream 5.0kb upstream 5000 false chr2: 21305990-21310989 Medicago truncatula
Medtr2g048375 5.0kb downstream 5.0kb downstream 5540 true chr2: 21300450-21305989 Medicago truncatula
Medtr2g048375 5.0kb downstream 5.0kb downstream 5000 false chr2: 21300450-21305449 Medicago truncatula
Medtr2g048375 10.0kb upstream 10.0kb upstream 10540 true chr2: 21305450-21315989 Medicago truncatula
Medtr2g048375 10.0kb upstream 10.0kb upstream 10000 false chr2: 21305990-21315989 Medicago truncatula
Medtr2g048375 10.0kb downstream 10.0kb downstream 10540 true chr2: 21295450-21305989 Medicago truncatula
Medtr2g048375 10.0kb downstream 10.0kb downstream 10000 false chr2: 21295450-21305449 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122294979 5265 Fabidae View MSA
124038642 5270 Rosid View MSA
123752863 5271 Pentapetalae View MSA
122774828 5272 Eudicot View MSA
122051145 5273 Angiosperm View MSA
121347829 5274 Embryophyte View MSA
123380647 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.485       Low
cufflinks 11.344     High  
cufflinks 13.966     High  
cufflinks 9.015     High  
cufflinks 15.897     High  
cufflinks 8.383       Low
cufflinks 17.532     High High
cufflinks 10.578     High  
cufflinks 20.425     High High

0 Strain