Gene : Medtr2g054780 M. truncatula Mt4.0v1
Defline:  (1 of 5) 3.1.1.5 - Lysophospholipase / Phospholipase B Description:  acyl-protein thioesterase
Genomic Order:  3042 Name:  ? Medtr2g054780
Secondary Identifier:  ? PAC:31064369
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-7409 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g054780 0.5kb upstream 0.5kb upstream 7145 true chr2: 23400915-23408059 Medicago truncatula
Medtr2g054780 0.5kb upstream 0.5kb upstream 500 false chr2: 23407560-23408059 Medicago truncatula
Medtr2g054780 0.5kb downstream 0.5kb downstream 7145 true chr2: 23400415-23407559 Medicago truncatula
Medtr2g054780 0.5kb downstream 0.5kb downstream 500 false chr2: 23400415-23400914 Medicago truncatula
Medtr2g054780 1.0kb upstream 1.0kb upstream 7645 true chr2: 23400915-23408559 Medicago truncatula
Medtr2g054780 1.0kb upstream 1.0kb upstream 1000 false chr2: 23407560-23408559 Medicago truncatula
Medtr2g054780 1.0kb downstream 1.0kb downstream 7645 true chr2: 23399915-23407559 Medicago truncatula
Medtr2g054780 1.0kb downstream 1.0kb downstream 1000 false chr2: 23399915-23400914 Medicago truncatula
Medtr2g054780 2.0kb upstream 2.0kb upstream 8645 true chr2: 23400915-23409559 Medicago truncatula
Medtr2g054780 2.0kb upstream 2.0kb upstream 2000 false chr2: 23407560-23409559 Medicago truncatula
Medtr2g054780 2.0kb downstream 2.0kb downstream 8645 true chr2: 23398915-23407559 Medicago truncatula
Medtr2g054780 2.0kb downstream 2.0kb downstream 2000 false chr2: 23398915-23400914 Medicago truncatula
Medtr2g054780 5.0kb upstream 5.0kb upstream 11645 true chr2: 23400915-23412559 Medicago truncatula
Medtr2g054780 5.0kb upstream 5.0kb upstream 5000 false chr2: 23407560-23412559 Medicago truncatula
Medtr2g054780 5.0kb downstream 5.0kb downstream 11645 true chr2: 23395915-23407559 Medicago truncatula
Medtr2g054780 5.0kb downstream 5.0kb downstream 5000 false chr2: 23395915-23400914 Medicago truncatula
Medtr2g054780 10.0kb upstream 10.0kb upstream 16645 true chr2: 23400915-23417559 Medicago truncatula
Medtr2g054780 10.0kb upstream 10.0kb upstream 10000 false chr2: 23407560-23417559 Medicago truncatula
Medtr2g054780 10.0kb downstream 10.0kb downstream 16645 true chr2: 23390915-23407559 Medicago truncatula
Medtr2g054780 10.0kb downstream 10.0kb downstream 10000 false chr2: 23390915-23400914 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306434 5265 Fabidae View MSA
124070848 5270 Rosid View MSA
123747021 5271 Pentapetalae View MSA
122795492 5272 Eudicot View MSA
122046747 5273 Angiosperm View MSA
121349351 5274 Embryophyte View MSA
123428773 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.234       Low
cufflinks 2.627        
cufflinks 2.361        
cufflinks 1.34       Low
cufflinks 3.179       High
cufflinks 1.418        
cufflinks 1.635        
cufflinks 2.413        
cufflinks 1.732        

0 Strain