Gene : Medtr2g054940 M. truncatula Mt4.0v1
Defline:  (1 of 6) 2.3.1.119//2.3.1.199 - Very-long-chain 3-oxoacyl-CoA synthase / Very-long-chain beta-ketoacyl-CoA synthase Description:  3-ketoacyl-CoA synthase-like protein
Genomic Order:  3051 Name:  ? Medtr2g054940
Secondary Identifier:  ? PAC:31064109
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Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5080 Medicago truncatula pathologic  
Mtruncatula PWY-6433 Medicago truncatula pathologic  
Mtruncatula PWY-6598 Medicago truncatula pathologic  
Mtruncatula PWY-7036 Medicago truncatula pathologic  
Mtruncatula PWY-7601 Medicago truncatula pathologic  
Mtruncatula PWY-7606 Medicago truncatula pathologic  
Mtruncatula PWY-7619 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g054940 0.5kb upstream 0.5kb upstream 3186 true chr2: 23498653-23501838 Medicago truncatula
Medtr2g054940 0.5kb upstream 0.5kb upstream 500 false chr2: 23501339-23501838 Medicago truncatula
Medtr2g054940 0.5kb downstream 0.5kb downstream 3186 true chr2: 23498153-23501338 Medicago truncatula
Medtr2g054940 0.5kb downstream 0.5kb downstream 500 false chr2: 23498153-23498652 Medicago truncatula
Medtr2g054940 1.0kb upstream 1.0kb upstream 3686 true chr2: 23498653-23502338 Medicago truncatula
Medtr2g054940 1.0kb upstream 1.0kb upstream 1000 false chr2: 23501339-23502338 Medicago truncatula
Medtr2g054940 1.0kb downstream 1.0kb downstream 3686 true chr2: 23497653-23501338 Medicago truncatula
Medtr2g054940 1.0kb downstream 1.0kb downstream 1000 false chr2: 23497653-23498652 Medicago truncatula
Medtr2g054940 2.0kb upstream 2.0kb upstream 4686 true chr2: 23498653-23503338 Medicago truncatula
Medtr2g054940 2.0kb upstream 2.0kb upstream 2000 false chr2: 23501339-23503338 Medicago truncatula
Medtr2g054940 2.0kb downstream 2.0kb downstream 4686 true chr2: 23496653-23501338 Medicago truncatula
Medtr2g054940 2.0kb downstream 2.0kb downstream 2000 false chr2: 23496653-23498652 Medicago truncatula
Medtr2g054940 5.0kb upstream 5.0kb upstream 7686 true chr2: 23498653-23506338 Medicago truncatula
Medtr2g054940 5.0kb upstream 5.0kb upstream 5000 false chr2: 23501339-23506338 Medicago truncatula
Medtr2g054940 5.0kb downstream 5.0kb downstream 7686 true chr2: 23493653-23501338 Medicago truncatula
Medtr2g054940 5.0kb downstream 5.0kb downstream 5000 false chr2: 23493653-23498652 Medicago truncatula
Medtr2g054940 10.0kb upstream 10.0kb upstream 12686 true chr2: 23498653-23511338 Medicago truncatula
Medtr2g054940 10.0kb upstream 10.0kb upstream 10000 false chr2: 23501339-23511338 Medicago truncatula
Medtr2g054940 10.0kb downstream 10.0kb downstream 12686 true chr2: 23488653-23501338 Medicago truncatula
Medtr2g054940 10.0kb downstream 10.0kb downstream 10000 false chr2: 23488653-23498652 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310983 5265 Fabidae View MSA
124069691 5270 Rosid View MSA
123752157 5271 Pentapetalae View MSA
122789250 5272 Eudicot View MSA
122044783 5273 Angiosperm View MSA
121349296 5274 Embryophyte View MSA
123425974 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 31.65     High  
cufflinks 8.412       Low
cufflinks 15.593     High  
cufflinks 31.107     High  
cufflinks 8.25       Low
cufflinks 33.155     High  
cufflinks 29.278     High  
cufflinks 8.552       Low
cufflinks 56.328     High High

0 Strain