Gene : Medtr2g058970 M. truncatula Mt4.0v1
Defline:  (1 of 13) PTHR33209:SF1 - SERINE PROTEASE SPPA, CHLOROPLASTIC Description:  signal peptide peptidase A (SppA) 36 kDa type protein
Genomic Order:  3142 Name:  ? Medtr2g058970
Secondary Identifier:  ? PAC:31064078
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g058970 0.5kb upstream 0.5kb upstream 12015 true chr2: 24346266-24358280 Medicago truncatula
Medtr2g058970 0.5kb upstream 0.5kb upstream 500 false chr2: 24346266-24346765 Medicago truncatula
Medtr2g058970 0.5kb downstream 0.5kb downstream 12015 true chr2: 24346766-24358780 Medicago truncatula
Medtr2g058970 0.5kb downstream 0.5kb downstream 500 false chr2: 24358281-24358780 Medicago truncatula
Medtr2g058970 1.0kb upstream 1.0kb upstream 12515 true chr2: 24345766-24358280 Medicago truncatula
Medtr2g058970 1.0kb upstream 1.0kb upstream 1000 false chr2: 24345766-24346765 Medicago truncatula
Medtr2g058970 1.0kb downstream 1.0kb downstream 12515 true chr2: 24346766-24359280 Medicago truncatula
Medtr2g058970 1.0kb downstream 1.0kb downstream 1000 false chr2: 24358281-24359280 Medicago truncatula
Medtr2g058970 2.0kb upstream 2.0kb upstream 13515 true chr2: 24344766-24358280 Medicago truncatula
Medtr2g058970 2.0kb upstream 2.0kb upstream 2000 false chr2: 24344766-24346765 Medicago truncatula
Medtr2g058970 2.0kb downstream 2.0kb downstream 13515 true chr2: 24346766-24360280 Medicago truncatula
Medtr2g058970 2.0kb downstream 2.0kb downstream 2000 false chr2: 24358281-24360280 Medicago truncatula
Medtr2g058970 5.0kb upstream 5.0kb upstream 16515 true chr2: 24341766-24358280 Medicago truncatula
Medtr2g058970 5.0kb upstream 5.0kb upstream 5000 false chr2: 24341766-24346765 Medicago truncatula
Medtr2g058970 5.0kb downstream 5.0kb downstream 16515 true chr2: 24346766-24363280 Medicago truncatula
Medtr2g058970 5.0kb downstream 5.0kb downstream 5000 false chr2: 24358281-24363280 Medicago truncatula
Medtr2g058970 10.0kb upstream 10.0kb upstream 21515 true chr2: 24336766-24358280 Medicago truncatula
Medtr2g058970 10.0kb upstream 10.0kb upstream 10000 false chr2: 24336766-24346765 Medicago truncatula
Medtr2g058970 10.0kb downstream 10.0kb downstream 21515 true chr2: 24346766-24368280 Medicago truncatula
Medtr2g058970 10.0kb downstream 10.0kb downstream 10000 false chr2: 24358281-24368280 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307269 5265 Fabidae View MSA
124067655 5270 Rosid View MSA
123738820 5271 Pentapetalae View MSA
122785684 5272 Eudicot View MSA
122045424 5273 Angiosperm View MSA
121344928 5274 Embryophyte View MSA
123424112 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.393        
cufflinks 4.195       High
cufflinks 2.589        
cufflinks 0.331        
cufflinks 4.847       High
cufflinks 0.173       Low
cufflinks 0.467        
cufflinks 3.167        
cufflinks 0.422        

0 Strain