Gene : Medtr2g036560 M. truncatula Mt4.0v1
Defline:  (1 of 599) PF13041 - PPR repeat family (PPR_2) Description:  PPR containing plant-like protein
Genomic Order:  2192 Name:  ? Medtr2g036560
Secondary Identifier:  ? PAC:31062697
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g036560 0.5kb upstream 0.5kb upstream 4267 true chr2: 15820871-15825137 Medicago truncatula
Medtr2g036560 0.5kb upstream 0.5kb upstream 500 false chr2: 15824638-15825137 Medicago truncatula
Medtr2g036560 0.5kb downstream 0.5kb downstream 4267 true chr2: 15820371-15824637 Medicago truncatula
Medtr2g036560 0.5kb downstream 0.5kb downstream 500 false chr2: 15820371-15820870 Medicago truncatula
Medtr2g036560 1.0kb upstream 1.0kb upstream 4767 true chr2: 15820871-15825637 Medicago truncatula
Medtr2g036560 1.0kb upstream 1.0kb upstream 1000 false chr2: 15824638-15825637 Medicago truncatula
Medtr2g036560 1.0kb downstream 1.0kb downstream 4767 true chr2: 15819871-15824637 Medicago truncatula
Medtr2g036560 1.0kb downstream 1.0kb downstream 1000 false chr2: 15819871-15820870 Medicago truncatula
Medtr2g036560 2.0kb upstream 2.0kb upstream 5767 true chr2: 15820871-15826637 Medicago truncatula
Medtr2g036560 2.0kb upstream 2.0kb upstream 2000 false chr2: 15824638-15826637 Medicago truncatula
Medtr2g036560 2.0kb downstream 2.0kb downstream 5767 true chr2: 15818871-15824637 Medicago truncatula
Medtr2g036560 2.0kb downstream 2.0kb downstream 2000 false chr2: 15818871-15820870 Medicago truncatula
Medtr2g036560 5.0kb upstream 5.0kb upstream 8767 true chr2: 15820871-15829637 Medicago truncatula
Medtr2g036560 5.0kb upstream 5.0kb upstream 5000 false chr2: 15824638-15829637 Medicago truncatula
Medtr2g036560 5.0kb downstream 5.0kb downstream 8767 true chr2: 15815871-15824637 Medicago truncatula
Medtr2g036560 5.0kb downstream 5.0kb downstream 5000 false chr2: 15815871-15820870 Medicago truncatula
Medtr2g036560 10.0kb upstream 10.0kb upstream 13767 true chr2: 15820871-15834637 Medicago truncatula
Medtr2g036560 10.0kb upstream 10.0kb upstream 10000 false chr2: 15824638-15834637 Medicago truncatula
Medtr2g036560 10.0kb downstream 10.0kb downstream 13767 true chr2: 15810871-15824637 Medicago truncatula
Medtr2g036560 10.0kb downstream 10.0kb downstream 10000 false chr2: 15810871-15820870 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309903 5265 Fabidae View MSA
124065938 5270 Rosid View MSA
123738887 5271 Pentapetalae View MSA
122785902 5272 Eudicot View MSA
122051295 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121349652 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.674        
cufflinks 24.91     High  
cufflinks 54.815     High High
cufflinks 0.49       Low
cufflinks 40.729     High High
cufflinks 0.887        
cufflinks 0.945        
cufflinks 47.318     High High
cufflinks 0.608        

0 Strain