Gene : Medtr2g039750 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR12919:SF20 - 28S RIBOSOMAL PROTEIN S16, MITOCHONDRIAL Description:  30S ribosomal S16-like protein
Genomic Order:  2393 Name:  ? Medtr2g039750
Secondary Identifier:  ? PAC:31062481
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g039750 0.5kb upstream 0.5kb upstream 3886 true chr2: 17426141-17430026 Medicago truncatula
Medtr2g039750 0.5kb upstream 0.5kb upstream 500 false chr2: 17426141-17426640 Medicago truncatula
Medtr2g039750 0.5kb downstream 0.5kb downstream 3886 true chr2: 17426641-17430526 Medicago truncatula
Medtr2g039750 0.5kb downstream 0.5kb downstream 500 false chr2: 17430027-17430526 Medicago truncatula
Medtr2g039750 1.0kb upstream 1.0kb upstream 4386 true chr2: 17425641-17430026 Medicago truncatula
Medtr2g039750 1.0kb upstream 1.0kb upstream 1000 false chr2: 17425641-17426640 Medicago truncatula
Medtr2g039750 1.0kb downstream 1.0kb downstream 4386 true chr2: 17426641-17431026 Medicago truncatula
Medtr2g039750 1.0kb downstream 1.0kb downstream 1000 false chr2: 17430027-17431026 Medicago truncatula
Medtr2g039750 2.0kb upstream 2.0kb upstream 5386 true chr2: 17424641-17430026 Medicago truncatula
Medtr2g039750 2.0kb upstream 2.0kb upstream 2000 false chr2: 17424641-17426640 Medicago truncatula
Medtr2g039750 2.0kb downstream 2.0kb downstream 5386 true chr2: 17426641-17432026 Medicago truncatula
Medtr2g039750 2.0kb downstream 2.0kb downstream 2000 false chr2: 17430027-17432026 Medicago truncatula
Medtr2g039750 5.0kb upstream 5.0kb upstream 8386 true chr2: 17421641-17430026 Medicago truncatula
Medtr2g039750 5.0kb upstream 5.0kb upstream 5000 false chr2: 17421641-17426640 Medicago truncatula
Medtr2g039750 5.0kb downstream 5.0kb downstream 8386 true chr2: 17426641-17435026 Medicago truncatula
Medtr2g039750 5.0kb downstream 5.0kb downstream 5000 false chr2: 17430027-17435026 Medicago truncatula
Medtr2g039750 10.0kb upstream 10.0kb upstream 13386 true chr2: 17416641-17430026 Medicago truncatula
Medtr2g039750 10.0kb upstream 10.0kb upstream 10000 false chr2: 17416641-17426640 Medicago truncatula
Medtr2g039750 10.0kb downstream 10.0kb downstream 13386 true chr2: 17426641-17440026 Medicago truncatula
Medtr2g039750 10.0kb downstream 10.0kb downstream 10000 false chr2: 17430027-17440026 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299837 5265 Fabidae View MSA
124065829 5270 Rosid View MSA
123738502 5271 Pentapetalae View MSA
122792819 5272 Eudicot View MSA
122051162 5273 Angiosperm View MSA
121348917 5274 Embryophyte View MSA
123426601 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.596        
cufflinks 2.37       Low
cufflinks 2.614        
cufflinks 5.614       High
cufflinks 3.72        
cufflinks 4.045        
cufflinks 2.725        
cufflinks 2.358       Low
cufflinks 5.638       High

0 Strain