Gene : Medtr2g042450 M. truncatula Mt4.0v1
Defline:  (1 of 1) 5.3.1.23 - S-methyl-5-thioribose-1-phosphate isomerase / S-methyl-5-thio-D-ribose-1-phosphate aldose-ketose-isomerase Description:  methylthioribose-1-phosphate isomerase
Genomic Order:  2550 Name:  ? Medtr2g042450
Secondary Identifier:  ? PAC:31062367
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-4361 Medicago truncatula pathologic  
Mtruncatula PWY-7270 Medicago truncatula pathologic  
Mtruncatula PWY-7528 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g042450 0.5kb upstream 0.5kb upstream 4701 true chr2: 18527006-18531706 Medicago truncatula
Medtr2g042450 0.5kb upstream 0.5kb upstream 500 false chr2: 18531207-18531706 Medicago truncatula
Medtr2g042450 0.5kb downstream 0.5kb downstream 4701 true chr2: 18526506-18531206 Medicago truncatula
Medtr2g042450 0.5kb downstream 0.5kb downstream 500 false chr2: 18526506-18527005 Medicago truncatula
Medtr2g042450 1.0kb upstream 1.0kb upstream 5201 true chr2: 18527006-18532206 Medicago truncatula
Medtr2g042450 1.0kb upstream 1.0kb upstream 1000 false chr2: 18531207-18532206 Medicago truncatula
Medtr2g042450 1.0kb downstream 1.0kb downstream 5201 true chr2: 18526006-18531206 Medicago truncatula
Medtr2g042450 1.0kb downstream 1.0kb downstream 1000 false chr2: 18526006-18527005 Medicago truncatula
Medtr2g042450 2.0kb upstream 2.0kb upstream 6201 true chr2: 18527006-18533206 Medicago truncatula
Medtr2g042450 2.0kb upstream 2.0kb upstream 2000 false chr2: 18531207-18533206 Medicago truncatula
Medtr2g042450 2.0kb downstream 2.0kb downstream 6201 true chr2: 18525006-18531206 Medicago truncatula
Medtr2g042450 2.0kb downstream 2.0kb downstream 2000 false chr2: 18525006-18527005 Medicago truncatula
Medtr2g042450 5.0kb upstream 5.0kb upstream 9201 true chr2: 18527006-18536206 Medicago truncatula
Medtr2g042450 5.0kb upstream 5.0kb upstream 5000 false chr2: 18531207-18536206 Medicago truncatula
Medtr2g042450 5.0kb downstream 5.0kb downstream 9201 true chr2: 18522006-18531206 Medicago truncatula
Medtr2g042450 5.0kb downstream 5.0kb downstream 5000 false chr2: 18522006-18527005 Medicago truncatula
Medtr2g042450 10.0kb upstream 10.0kb upstream 14201 true chr2: 18527006-18541206 Medicago truncatula
Medtr2g042450 10.0kb upstream 10.0kb upstream 10000 false chr2: 18531207-18541206 Medicago truncatula
Medtr2g042450 10.0kb downstream 10.0kb downstream 14201 true chr2: 18517006-18531206 Medicago truncatula
Medtr2g042450 10.0kb downstream 10.0kb downstream 10000 false chr2: 18517006-18527005 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303152 5265 Fabidae View MSA
124060423 5270 Rosid View MSA
123740094 5271 Pentapetalae View MSA
122788864 5272 Eudicot View MSA
122043863 5273 Angiosperm View MSA
121310201 5274 Embryophyte View MSA
123428305 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.259     High  
cufflinks 10.488     High  
cufflinks 14.629     High High
cufflinks 4.277       Low
cufflinks 11.971     High  
cufflinks 2.839       Low
cufflinks 4.919        
cufflinks 10.97     High  
cufflinks 7.771        

0 Strain