Gene : Medtr2g030200 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR19384:SF54 - FERREDOXIN--NADP REDUCTASE, ROOT ISOZYME 1, CHLOROPLASTIC-RELATED Description:  ferredoxin reductase-like NAD(P) binding domain protein
Genomic Order:  1600 Name:  ? Medtr2g030200
Secondary Identifier:  ? PAC:31066766
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PHOTOALL-PWY Medicago truncatula pathologic  
Mtruncatula PWY-101 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g030200 0.5kb upstream 0.5kb upstream 4224 true chr2: 11325142-11329365 Medicago truncatula
Medtr2g030200 0.5kb upstream 0.5kb upstream 500 false chr2: 11325142-11325641 Medicago truncatula
Medtr2g030200 0.5kb downstream 0.5kb downstream 4224 true chr2: 11325642-11329865 Medicago truncatula
Medtr2g030200 0.5kb downstream 0.5kb downstream 500 false chr2: 11329366-11329865 Medicago truncatula
Medtr2g030200 1.0kb upstream 1.0kb upstream 4724 true chr2: 11324642-11329365 Medicago truncatula
Medtr2g030200 1.0kb upstream 1.0kb upstream 1000 false chr2: 11324642-11325641 Medicago truncatula
Medtr2g030200 1.0kb downstream 1.0kb downstream 4724 true chr2: 11325642-11330365 Medicago truncatula
Medtr2g030200 1.0kb downstream 1.0kb downstream 1000 false chr2: 11329366-11330365 Medicago truncatula
Medtr2g030200 2.0kb upstream 2.0kb upstream 5724 true chr2: 11323642-11329365 Medicago truncatula
Medtr2g030200 2.0kb upstream 2.0kb upstream 2000 false chr2: 11323642-11325641 Medicago truncatula
Medtr2g030200 2.0kb downstream 2.0kb downstream 5724 true chr2: 11325642-11331365 Medicago truncatula
Medtr2g030200 2.0kb downstream 2.0kb downstream 2000 false chr2: 11329366-11331365 Medicago truncatula
Medtr2g030200 5.0kb upstream 5.0kb upstream 8724 true chr2: 11320642-11329365 Medicago truncatula
Medtr2g030200 5.0kb upstream 5.0kb upstream 5000 false chr2: 11320642-11325641 Medicago truncatula
Medtr2g030200 5.0kb downstream 5.0kb downstream 8724 true chr2: 11325642-11334365 Medicago truncatula
Medtr2g030200 5.0kb downstream 5.0kb downstream 5000 false chr2: 11329366-11334365 Medicago truncatula
Medtr2g030200 10.0kb upstream 10.0kb upstream 13724 true chr2: 11315642-11329365 Medicago truncatula
Medtr2g030200 10.0kb upstream 10.0kb upstream 10000 false chr2: 11315642-11325641 Medicago truncatula
Medtr2g030200 10.0kb downstream 10.0kb downstream 13724 true chr2: 11325642-11339365 Medicago truncatula
Medtr2g030200 10.0kb downstream 10.0kb downstream 10000 false chr2: 11329366-11339365 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303230 5265 Fabidae View MSA
124064755 5270 Rosid View MSA
123736625 5271 Pentapetalae View MSA
122790491 5272 Eudicot View MSA
122045006 5273 Angiosperm View MSA
121347443 5274 Embryophyte View MSA
123424825 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 75.563     High High
cufflinks 75.162     High High
cufflinks 19.734     High  
cufflinks 23.24     High  
cufflinks 23.02     High  
cufflinks 8.036       Low
cufflinks 23.893     High  
cufflinks 26.796     High  
cufflinks 80.821     High High

0 Strain