Gene : Medtr2g030240 M. truncatula Mt4.0v1
Defline:  (1 of 1) 6.2.1.26 - o-succinylbenzoate--CoA ligase / OSB-CoA synthetase Description:  2-succinylbenzoate-CoA ligase/peroxisomal protein
Genomic Order:  1604 Name:  ? Medtr2g030240
Secondary Identifier:  ? PAC:31064571
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5837 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g030240 0.5kb upstream 0.5kb upstream 4184 true chr2: 11341993-11346176 Medicago truncatula
Medtr2g030240 0.5kb upstream 0.5kb upstream 500 false chr2: 11341993-11342492 Medicago truncatula
Medtr2g030240 0.5kb downstream 0.5kb downstream 4184 true chr2: 11342493-11346676 Medicago truncatula
Medtr2g030240 0.5kb downstream 0.5kb downstream 500 false chr2: 11346177-11346676 Medicago truncatula
Medtr2g030240 1.0kb upstream 1.0kb upstream 4684 true chr2: 11341493-11346176 Medicago truncatula
Medtr2g030240 1.0kb upstream 1.0kb upstream 1000 false chr2: 11341493-11342492 Medicago truncatula
Medtr2g030240 1.0kb downstream 1.0kb downstream 4684 true chr2: 11342493-11347176 Medicago truncatula
Medtr2g030240 1.0kb downstream 1.0kb downstream 1000 false chr2: 11346177-11347176 Medicago truncatula
Medtr2g030240 2.0kb upstream 2.0kb upstream 5684 true chr2: 11340493-11346176 Medicago truncatula
Medtr2g030240 2.0kb upstream 2.0kb upstream 2000 false chr2: 11340493-11342492 Medicago truncatula
Medtr2g030240 2.0kb downstream 2.0kb downstream 5684 true chr2: 11342493-11348176 Medicago truncatula
Medtr2g030240 2.0kb downstream 2.0kb downstream 2000 false chr2: 11346177-11348176 Medicago truncatula
Medtr2g030240 5.0kb upstream 5.0kb upstream 8684 true chr2: 11337493-11346176 Medicago truncatula
Medtr2g030240 5.0kb upstream 5.0kb upstream 5000 false chr2: 11337493-11342492 Medicago truncatula
Medtr2g030240 5.0kb downstream 5.0kb downstream 8684 true chr2: 11342493-11351176 Medicago truncatula
Medtr2g030240 5.0kb downstream 5.0kb downstream 5000 false chr2: 11346177-11351176 Medicago truncatula
Medtr2g030240 10.0kb upstream 10.0kb upstream 13684 true chr2: 11332493-11346176 Medicago truncatula
Medtr2g030240 10.0kb upstream 10.0kb upstream 10000 false chr2: 11332493-11342492 Medicago truncatula
Medtr2g030240 10.0kb downstream 10.0kb downstream 13684 true chr2: 11342493-11356176 Medicago truncatula
Medtr2g030240 10.0kb downstream 10.0kb downstream 10000 false chr2: 11346177-11356176 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301753 5265 Fabidae View MSA
124061989 5270 Rosid View MSA
123752148 5271 Pentapetalae View MSA
122787718 5272 Eudicot View MSA
122042580 5273 Angiosperm View MSA
121346156 5274 Embryophyte View MSA
123427881 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.079        
cufflinks 11.551     High  
cufflinks 9.035        
cufflinks 0.047     Low Low
cufflinks 14.777     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.21        
cufflinks 12.62     High  
cufflinks 0.031     Low Low

0 Strain