Gene : Medtr2g032710 M. truncatula Mt4.0v1
Defline:  (1 of 2) PF13229 - Right handed beta helix region (Beta_helix) Description:  polygalacturonase plant-like protein
Genomic Order:  1733 Name:  ? Medtr2g032710
Secondary Identifier:  ? PAC:31067012
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-1081 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g032710 0.5kb upstream 0.5kb upstream 7393 true chr2: 12315408-12322800 Medicago truncatula
Medtr2g032710 0.5kb upstream 0.5kb upstream 500 false chr2: 12322301-12322800 Medicago truncatula
Medtr2g032710 0.5kb downstream 0.5kb downstream 7393 true chr2: 12314908-12322300 Medicago truncatula
Medtr2g032710 0.5kb downstream 0.5kb downstream 500 false chr2: 12314908-12315407 Medicago truncatula
Medtr2g032710 1.0kb upstream 1.0kb upstream 7893 true chr2: 12315408-12323300 Medicago truncatula
Medtr2g032710 1.0kb upstream 1.0kb upstream 1000 false chr2: 12322301-12323300 Medicago truncatula
Medtr2g032710 1.0kb downstream 1.0kb downstream 7893 true chr2: 12314408-12322300 Medicago truncatula
Medtr2g032710 1.0kb downstream 1.0kb downstream 1000 false chr2: 12314408-12315407 Medicago truncatula
Medtr2g032710 2.0kb upstream 2.0kb upstream 8893 true chr2: 12315408-12324300 Medicago truncatula
Medtr2g032710 2.0kb upstream 2.0kb upstream 2000 false chr2: 12322301-12324300 Medicago truncatula
Medtr2g032710 2.0kb downstream 2.0kb downstream 8893 true chr2: 12313408-12322300 Medicago truncatula
Medtr2g032710 2.0kb downstream 2.0kb downstream 2000 false chr2: 12313408-12315407 Medicago truncatula
Medtr2g032710 5.0kb upstream 5.0kb upstream 11893 true chr2: 12315408-12327300 Medicago truncatula
Medtr2g032710 5.0kb upstream 5.0kb upstream 5000 false chr2: 12322301-12327300 Medicago truncatula
Medtr2g032710 5.0kb downstream 5.0kb downstream 11893 true chr2: 12310408-12322300 Medicago truncatula
Medtr2g032710 5.0kb downstream 5.0kb downstream 5000 false chr2: 12310408-12315407 Medicago truncatula
Medtr2g032710 10.0kb upstream 10.0kb upstream 16893 true chr2: 12315408-12332300 Medicago truncatula
Medtr2g032710 10.0kb upstream 10.0kb upstream 10000 false chr2: 12322301-12332300 Medicago truncatula
Medtr2g032710 10.0kb downstream 10.0kb downstream 16893 true chr2: 12305408-12322300 Medicago truncatula
Medtr2g032710 10.0kb downstream 10.0kb downstream 10000 false chr2: 12305408-12315407 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312563 5265 Fabidae View MSA
124065487 5270 Rosid View MSA
123736627 5271 Pentapetalae View MSA
122795582 5272 Eudicot View MSA
122048646 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.66       High
cufflinks 0.042     Low  
cufflinks 0.015     Low  
cufflinks 0.019     Low  
cufflinks 0.026     Low  
cufflinks 0.023     Low  
cufflinks 0.043     Low  
cufflinks 0.047     Low  
cufflinks 0.039     Low  

0 Strain