Gene : Medtr2g022140 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR11088//PTHR11088:SF34 - TRNA DELTA 2 -ISOPENTENYLPYROPHOSPHATE TRANSFERASE-RELATED Description:  adenylate isopentenyltransferase
Genomic Order:  1115 Name:  ? Medtr2g022140
Secondary Identifier:  ? PAC:31064077
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-2681 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g022140 0.5kb upstream 0.5kb upstream 3262 true chr2: 7593304-7596565 Medicago truncatula
Medtr2g022140 0.5kb upstream 0.5kb upstream 500 false chr2: 7596066-7596565 Medicago truncatula
Medtr2g022140 0.5kb downstream 0.5kb downstream 3262 true chr2: 7592804-7596065 Medicago truncatula
Medtr2g022140 0.5kb downstream 0.5kb downstream 500 false chr2: 7592804-7593303 Medicago truncatula
Medtr2g022140 1.0kb upstream 1.0kb upstream 3762 true chr2: 7593304-7597065 Medicago truncatula
Medtr2g022140 1.0kb upstream 1.0kb upstream 1000 false chr2: 7596066-7597065 Medicago truncatula
Medtr2g022140 1.0kb downstream 1.0kb downstream 3762 true chr2: 7592304-7596065 Medicago truncatula
Medtr2g022140 1.0kb downstream 1.0kb downstream 1000 false chr2: 7592304-7593303 Medicago truncatula
Medtr2g022140 2.0kb upstream 2.0kb upstream 4762 true chr2: 7593304-7598065 Medicago truncatula
Medtr2g022140 2.0kb upstream 2.0kb upstream 2000 false chr2: 7596066-7598065 Medicago truncatula
Medtr2g022140 2.0kb downstream 2.0kb downstream 4762 true chr2: 7591304-7596065 Medicago truncatula
Medtr2g022140 2.0kb downstream 2.0kb downstream 2000 false chr2: 7591304-7593303 Medicago truncatula
Medtr2g022140 5.0kb upstream 5.0kb upstream 7762 true chr2: 7593304-7601065 Medicago truncatula
Medtr2g022140 5.0kb upstream 5.0kb upstream 5000 false chr2: 7596066-7601065 Medicago truncatula
Medtr2g022140 5.0kb downstream 5.0kb downstream 7762 true chr2: 7588304-7596065 Medicago truncatula
Medtr2g022140 5.0kb downstream 5.0kb downstream 5000 false chr2: 7588304-7593303 Medicago truncatula
Medtr2g022140 10.0kb upstream 10.0kb upstream 12762 true chr2: 7593304-7606065 Medicago truncatula
Medtr2g022140 10.0kb upstream 10.0kb upstream 10000 false chr2: 7596066-7606065 Medicago truncatula
Medtr2g022140 10.0kb downstream 10.0kb downstream 12762 true chr2: 7583304-7596065 Medicago truncatula
Medtr2g022140 10.0kb downstream 10.0kb downstream 10000 false chr2: 7583304-7593303 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313090 5265 Fabidae View MSA
124067788 5270 Rosid View MSA
123742235 5271 Pentapetalae View MSA
122793817 5272 Eudicot View MSA
122042275 5273 Angiosperm View MSA
121309945 5274 Embryophyte View MSA
123428607 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.474        
cufflinks 0.366        
cufflinks 0.17       Low
cufflinks 4.209       High
cufflinks 0.245        
cufflinks 0.412        
cufflinks 2.224        
cufflinks 0.224        
cufflinks 6.611       High

0 Strain