Gene : Medtr2g022880 M. truncatula Mt4.0v1
Defline:  (1 of 6) PF06454 - Protein of unknown function (DUF1084) (DUF1084) Description:  tobamovirus multiplication-like protein
Genomic Order:  1169 Name:  ? Medtr2g022880
Secondary Identifier:  ? PAC:31063526
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g022880 0.5kb upstream 0.5kb upstream 4516 true chr2: 7962210-7966725 Medicago truncatula
Medtr2g022880 0.5kb upstream 0.5kb upstream 500 false chr2: 7962210-7962709 Medicago truncatula
Medtr2g022880 0.5kb downstream 0.5kb downstream 4516 true chr2: 7962710-7967225 Medicago truncatula
Medtr2g022880 0.5kb downstream 0.5kb downstream 500 false chr2: 7966726-7967225 Medicago truncatula
Medtr2g022880 1.0kb upstream 1.0kb upstream 5016 true chr2: 7961710-7966725 Medicago truncatula
Medtr2g022880 1.0kb upstream 1.0kb upstream 1000 false chr2: 7961710-7962709 Medicago truncatula
Medtr2g022880 1.0kb downstream 1.0kb downstream 5016 true chr2: 7962710-7967725 Medicago truncatula
Medtr2g022880 1.0kb downstream 1.0kb downstream 1000 false chr2: 7966726-7967725 Medicago truncatula
Medtr2g022880 2.0kb upstream 2.0kb upstream 6016 true chr2: 7960710-7966725 Medicago truncatula
Medtr2g022880 2.0kb upstream 2.0kb upstream 2000 false chr2: 7960710-7962709 Medicago truncatula
Medtr2g022880 2.0kb downstream 2.0kb downstream 6016 true chr2: 7962710-7968725 Medicago truncatula
Medtr2g022880 2.0kb downstream 2.0kb downstream 2000 false chr2: 7966726-7968725 Medicago truncatula
Medtr2g022880 5.0kb upstream 5.0kb upstream 9016 true chr2: 7957710-7966725 Medicago truncatula
Medtr2g022880 5.0kb upstream 5.0kb upstream 5000 false chr2: 7957710-7962709 Medicago truncatula
Medtr2g022880 5.0kb downstream 5.0kb downstream 9016 true chr2: 7962710-7971725 Medicago truncatula
Medtr2g022880 5.0kb downstream 5.0kb downstream 5000 false chr2: 7966726-7971725 Medicago truncatula
Medtr2g022880 10.0kb upstream 10.0kb upstream 14016 true chr2: 7952710-7966725 Medicago truncatula
Medtr2g022880 10.0kb upstream 10.0kb upstream 10000 false chr2: 7952710-7962709 Medicago truncatula
Medtr2g022880 10.0kb downstream 10.0kb downstream 14016 true chr2: 7962710-7976725 Medicago truncatula
Medtr2g022880 10.0kb downstream 10.0kb downstream 10000 false chr2: 7966726-7976725 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122288659 5265 Fabidae View MSA
124070535 5270 Rosid View MSA
123753465 5271 Pentapetalae View MSA
122796045 5272 Eudicot View MSA
122049721 5273 Angiosperm View MSA
121345693 5274 Embryophyte View MSA
123426001 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.093        
cufflinks 0.444        
cufflinks 0.557        
cufflinks 0.178        
cufflinks 0.747        
cufflinks 0.008     Low Low
cufflinks 0.218        
cufflinks 0.424        
cufflinks 0.227        

0 Strain