Gene : Medtr2g025170 M. truncatula Mt4.0v1
Defline:  (1 of 12) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Description:  RPM1-interacting protein 4 (RIN4) family protein
Genomic Order:  1285 Name:  ? Medtr2g025170
Secondary Identifier:  ? PAC:31064429
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g025170 0.5kb upstream 0.5kb upstream 1354 true chr2: 8954195-8955548 Medicago truncatula
Medtr2g025170 0.5kb upstream 0.5kb upstream 500 false chr2: 8954195-8954694 Medicago truncatula
Medtr2g025170 0.5kb downstream 0.5kb downstream 1354 true chr2: 8954695-8956048 Medicago truncatula
Medtr2g025170 0.5kb downstream 0.5kb downstream 500 false chr2: 8955549-8956048 Medicago truncatula
Medtr2g025170 1.0kb upstream 1.0kb upstream 1854 true chr2: 8953695-8955548 Medicago truncatula
Medtr2g025170 1.0kb upstream 1.0kb upstream 1000 false chr2: 8953695-8954694 Medicago truncatula
Medtr2g025170 1.0kb downstream 1.0kb downstream 1854 true chr2: 8954695-8956548 Medicago truncatula
Medtr2g025170 1.0kb downstream 1.0kb downstream 1000 false chr2: 8955549-8956548 Medicago truncatula
Medtr2g025170 2.0kb upstream 2.0kb upstream 2854 true chr2: 8952695-8955548 Medicago truncatula
Medtr2g025170 2.0kb upstream 2.0kb upstream 2000 false chr2: 8952695-8954694 Medicago truncatula
Medtr2g025170 2.0kb downstream 2.0kb downstream 2854 true chr2: 8954695-8957548 Medicago truncatula
Medtr2g025170 2.0kb downstream 2.0kb downstream 2000 false chr2: 8955549-8957548 Medicago truncatula
Medtr2g025170 5.0kb upstream 5.0kb upstream 5854 true chr2: 8949695-8955548 Medicago truncatula
Medtr2g025170 5.0kb upstream 5.0kb upstream 5000 false chr2: 8949695-8954694 Medicago truncatula
Medtr2g025170 5.0kb downstream 5.0kb downstream 5854 true chr2: 8954695-8960548 Medicago truncatula
Medtr2g025170 5.0kb downstream 5.0kb downstream 5000 false chr2: 8955549-8960548 Medicago truncatula
Medtr2g025170 10.0kb upstream 10.0kb upstream 10854 true chr2: 8944695-8955548 Medicago truncatula
Medtr2g025170 10.0kb upstream 10.0kb upstream 10000 false chr2: 8944695-8954694 Medicago truncatula
Medtr2g025170 10.0kb downstream 10.0kb downstream 10854 true chr2: 8954695-8965548 Medicago truncatula
Medtr2g025170 10.0kb downstream 10.0kb downstream 10000 false chr2: 8955549-8965548 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309341 5265 Fabidae View MSA
124074816 5270 Rosid View MSA
123749229 5271 Pentapetalae View MSA
122795391 5272 Eudicot View MSA
122048165 5273 Angiosperm View MSA
121344169 5274 Embryophyte View MSA
123379991 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.047     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.014     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.063        
cufflinks 0.085     Low  

0 Strain