Gene : Medtr2g027540 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR11538//PTHR11538:SF43 - PHENYLALANYL-TRNA SYNTHETASE Description:  nucleic acid-binding protein, putative
Genomic Order:  1444 Name:  ? Medtr2g027540
Secondary Identifier:  ? PAC:31064935
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g027540 0.5kb upstream 0.5kb upstream 3536 true chr2: 10085930-10089465 Medicago truncatula
Medtr2g027540 0.5kb upstream 0.5kb upstream 500 false chr2: 10085930-10086429 Medicago truncatula
Medtr2g027540 0.5kb downstream 0.5kb downstream 3536 true chr2: 10086430-10089965 Medicago truncatula
Medtr2g027540 0.5kb downstream 0.5kb downstream 500 false chr2: 10089466-10089965 Medicago truncatula
Medtr2g027540 1.0kb upstream 1.0kb upstream 4036 true chr2: 10085430-10089465 Medicago truncatula
Medtr2g027540 1.0kb upstream 1.0kb upstream 1000 false chr2: 10085430-10086429 Medicago truncatula
Medtr2g027540 1.0kb downstream 1.0kb downstream 4036 true chr2: 10086430-10090465 Medicago truncatula
Medtr2g027540 1.0kb downstream 1.0kb downstream 1000 false chr2: 10089466-10090465 Medicago truncatula
Medtr2g027540 2.0kb upstream 2.0kb upstream 5036 true chr2: 10084430-10089465 Medicago truncatula
Medtr2g027540 2.0kb upstream 2.0kb upstream 2000 false chr2: 10084430-10086429 Medicago truncatula
Medtr2g027540 2.0kb downstream 2.0kb downstream 5036 true chr2: 10086430-10091465 Medicago truncatula
Medtr2g027540 2.0kb downstream 2.0kb downstream 2000 false chr2: 10089466-10091465 Medicago truncatula
Medtr2g027540 5.0kb upstream 5.0kb upstream 8036 true chr2: 10081430-10089465 Medicago truncatula
Medtr2g027540 5.0kb upstream 5.0kb upstream 5000 false chr2: 10081430-10086429 Medicago truncatula
Medtr2g027540 5.0kb downstream 5.0kb downstream 8036 true chr2: 10086430-10094465 Medicago truncatula
Medtr2g027540 5.0kb downstream 5.0kb downstream 5000 false chr2: 10089466-10094465 Medicago truncatula
Medtr2g027540 10.0kb upstream 10.0kb upstream 13036 true chr2: 10076430-10089465 Medicago truncatula
Medtr2g027540 10.0kb upstream 10.0kb upstream 10000 false chr2: 10076430-10086429 Medicago truncatula
Medtr2g027540 10.0kb downstream 10.0kb downstream 13036 true chr2: 10086430-10099465 Medicago truncatula
Medtr2g027540 10.0kb downstream 10.0kb downstream 10000 false chr2: 10089466-10099465 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029703 5273 Angiosperm View MSA
122310840 5265 Fabidae View MSA
124074900 5270 Rosid View MSA
123750465 5271 Pentapetalae View MSA
122797518 5272 Eudicot View MSA
121349631 5274 Embryophyte View MSA
123425246 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.131        
cufflinks 0.636        
cufflinks 1.169        
cufflinks 0.396       Low
cufflinks 0.546        
cufflinks 0.381       Low
cufflinks 1.314       High
cufflinks 0.944        
cufflinks 1.082        

0 Strain