Gene : Medtr2g027110 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR31573:SF1 - ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 2 Description:  2OG-Fe(II) oxygenase family oxidoreductase
Genomic Order:  1419 Name:  ? Medtr2g027110
Secondary Identifier:  ? PAC:31066397
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g027110 0.5kb upstream 0.5kb upstream 2782 true chr2: 9876905-9879686 Medicago truncatula
Medtr2g027110 0.5kb upstream 0.5kb upstream 500 false chr2: 9876905-9877404 Medicago truncatula
Medtr2g027110 0.5kb downstream 0.5kb downstream 2782 true chr2: 9877405-9880186 Medicago truncatula
Medtr2g027110 0.5kb downstream 0.5kb downstream 500 false chr2: 9879687-9880186 Medicago truncatula
Medtr2g027110 1.0kb upstream 1.0kb upstream 3282 true chr2: 9876405-9879686 Medicago truncatula
Medtr2g027110 1.0kb upstream 1.0kb upstream 1000 false chr2: 9876405-9877404 Medicago truncatula
Medtr2g027110 1.0kb downstream 1.0kb downstream 3282 true chr2: 9877405-9880686 Medicago truncatula
Medtr2g027110 1.0kb downstream 1.0kb downstream 1000 false chr2: 9879687-9880686 Medicago truncatula
Medtr2g027110 2.0kb upstream 2.0kb upstream 4282 true chr2: 9875405-9879686 Medicago truncatula
Medtr2g027110 2.0kb upstream 2.0kb upstream 2000 false chr2: 9875405-9877404 Medicago truncatula
Medtr2g027110 2.0kb downstream 2.0kb downstream 4282 true chr2: 9877405-9881686 Medicago truncatula
Medtr2g027110 2.0kb downstream 2.0kb downstream 2000 false chr2: 9879687-9881686 Medicago truncatula
Medtr2g027110 5.0kb upstream 5.0kb upstream 7282 true chr2: 9872405-9879686 Medicago truncatula
Medtr2g027110 5.0kb upstream 5.0kb upstream 5000 false chr2: 9872405-9877404 Medicago truncatula
Medtr2g027110 5.0kb downstream 5.0kb downstream 7282 true chr2: 9877405-9884686 Medicago truncatula
Medtr2g027110 5.0kb downstream 5.0kb downstream 5000 false chr2: 9879687-9884686 Medicago truncatula
Medtr2g027110 10.0kb upstream 10.0kb upstream 12282 true chr2: 9867405-9879686 Medicago truncatula
Medtr2g027110 10.0kb upstream 10.0kb upstream 10000 false chr2: 9867405-9877404 Medicago truncatula
Medtr2g027110 10.0kb downstream 10.0kb downstream 12282 true chr2: 9877405-9889686 Medicago truncatula
Medtr2g027110 10.0kb downstream 10.0kb downstream 10000 false chr2: 9879687-9889686 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306751 5265 Fabidae View MSA
124050829 5270 Rosid View MSA
123749996 5271 Pentapetalae View MSA
122791674 5272 Eudicot View MSA
122048951 5273 Angiosperm View MSA
121351428 5274 Embryophyte View MSA
123423770 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.643        
cufflinks 0.764        
cufflinks 1.046        
cufflinks 0.523        
cufflinks 0.964        
cufflinks 0.105     Low Low
cufflinks 0.883        
cufflinks 0.887        
cufflinks 0.509        

0 Strain