Gene : Medtr2g086700 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR13789//PTHR13789:SF203 - MONOOXYGENASE Description:  capsanthin/capsorubin synthase, chromoplast protein
Genomic Order:  4581 Name:  ? Medtr2g086700
Secondary Identifier:  ? PAC:31063354
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6809 Medicago truncatula pathologic  
Mtruncatula PWY-695 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g086700 0.5kb upstream 0.5kb upstream 2560 true chr2: 36454622-36457181 Medicago truncatula
Medtr2g086700 0.5kb upstream 0.5kb upstream 500 false chr2: 36454622-36455121 Medicago truncatula
Medtr2g086700 0.5kb downstream 0.5kb downstream 2560 true chr2: 36455122-36457681 Medicago truncatula
Medtr2g086700 0.5kb downstream 0.5kb downstream 500 false chr2: 36457182-36457681 Medicago truncatula
Medtr2g086700 1.0kb upstream 1.0kb upstream 3060 true chr2: 36454122-36457181 Medicago truncatula
Medtr2g086700 1.0kb upstream 1.0kb upstream 1000 false chr2: 36454122-36455121 Medicago truncatula
Medtr2g086700 1.0kb downstream 1.0kb downstream 3060 true chr2: 36455122-36458181 Medicago truncatula
Medtr2g086700 1.0kb downstream 1.0kb downstream 1000 false chr2: 36457182-36458181 Medicago truncatula
Medtr2g086700 2.0kb upstream 2.0kb upstream 4060 true chr2: 36453122-36457181 Medicago truncatula
Medtr2g086700 2.0kb upstream 2.0kb upstream 2000 false chr2: 36453122-36455121 Medicago truncatula
Medtr2g086700 2.0kb downstream 2.0kb downstream 4060 true chr2: 36455122-36459181 Medicago truncatula
Medtr2g086700 2.0kb downstream 2.0kb downstream 2000 false chr2: 36457182-36459181 Medicago truncatula
Medtr2g086700 5.0kb upstream 5.0kb upstream 7060 true chr2: 36450122-36457181 Medicago truncatula
Medtr2g086700 5.0kb upstream 5.0kb upstream 5000 false chr2: 36450122-36455121 Medicago truncatula
Medtr2g086700 5.0kb downstream 5.0kb downstream 7060 true chr2: 36455122-36462181 Medicago truncatula
Medtr2g086700 5.0kb downstream 5.0kb downstream 5000 false chr2: 36457182-36462181 Medicago truncatula
Medtr2g086700 10.0kb upstream 10.0kb upstream 12060 true chr2: 36445122-36457181 Medicago truncatula
Medtr2g086700 10.0kb upstream 10.0kb upstream 10000 false chr2: 36445122-36455121 Medicago truncatula
Medtr2g086700 10.0kb downstream 10.0kb downstream 12060 true chr2: 36455122-36467181 Medicago truncatula
Medtr2g086700 10.0kb downstream 10.0kb downstream 10000 false chr2: 36457182-36467181 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308924 5265 Fabidae View MSA
124070716 5270 Rosid View MSA
123749598 5271 Pentapetalae View MSA
122795342 5272 Eudicot View MSA
122048987 5273 Angiosperm View MSA
121311196 5274 Embryophyte View MSA
123348524 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.1       Low
cufflinks 0.256        
cufflinks 0.166        
cufflinks 0.198        
cufflinks 0.569        
cufflinks 0.374        
cufflinks 0.744        
cufflinks 0.311        
cufflinks 1.387       High

0 Strain