Gene : Medtr2g088400 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR11206//PTHR11206:SF143 - MULTIDRUG RESISTANCE PROTEIN Description:  MATE efflux family protein
Genomic Order:  4694 Name:  ? Medtr2g088400
Secondary Identifier:  ? PAC:31065574
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g088400 0.5kb upstream 0.5kb upstream 5342 true chr2: 37262432-37267773 Medicago truncatula
Medtr2g088400 0.5kb upstream 0.5kb upstream 500 false chr2: 37262432-37262931 Medicago truncatula
Medtr2g088400 0.5kb downstream 0.5kb downstream 5342 true chr2: 37262932-37268273 Medicago truncatula
Medtr2g088400 0.5kb downstream 0.5kb downstream 500 false chr2: 37267774-37268273 Medicago truncatula
Medtr2g088400 1.0kb upstream 1.0kb upstream 5842 true chr2: 37261932-37267773 Medicago truncatula
Medtr2g088400 1.0kb upstream 1.0kb upstream 1000 false chr2: 37261932-37262931 Medicago truncatula
Medtr2g088400 1.0kb downstream 1.0kb downstream 5842 true chr2: 37262932-37268773 Medicago truncatula
Medtr2g088400 1.0kb downstream 1.0kb downstream 1000 false chr2: 37267774-37268773 Medicago truncatula
Medtr2g088400 2.0kb upstream 2.0kb upstream 6842 true chr2: 37260932-37267773 Medicago truncatula
Medtr2g088400 2.0kb upstream 2.0kb upstream 2000 false chr2: 37260932-37262931 Medicago truncatula
Medtr2g088400 2.0kb downstream 2.0kb downstream 6842 true chr2: 37262932-37269773 Medicago truncatula
Medtr2g088400 2.0kb downstream 2.0kb downstream 2000 false chr2: 37267774-37269773 Medicago truncatula
Medtr2g088400 5.0kb upstream 5.0kb upstream 9842 true chr2: 37257932-37267773 Medicago truncatula
Medtr2g088400 5.0kb upstream 5.0kb upstream 5000 false chr2: 37257932-37262931 Medicago truncatula
Medtr2g088400 5.0kb downstream 5.0kb downstream 9842 true chr2: 37262932-37272773 Medicago truncatula
Medtr2g088400 5.0kb downstream 5.0kb downstream 5000 false chr2: 37267774-37272773 Medicago truncatula
Medtr2g088400 10.0kb upstream 10.0kb upstream 14842 true chr2: 37252932-37267773 Medicago truncatula
Medtr2g088400 10.0kb upstream 10.0kb upstream 10000 false chr2: 37252932-37262931 Medicago truncatula
Medtr2g088400 10.0kb downstream 10.0kb downstream 14842 true chr2: 37262932-37277773 Medicago truncatula
Medtr2g088400 10.0kb downstream 10.0kb downstream 10000 false chr2: 37267774-37277773 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309194 5265 Fabidae View MSA
124071772 5270 Rosid View MSA
123747983 5271 Pentapetalae View MSA
122786922 5272 Eudicot View MSA
122050249 5273 Angiosperm View MSA
121311823 5274 Embryophyte View MSA
123428088 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.954     High  
cufflinks 14.647     High  
cufflinks 23.543     High High
cufflinks 14.831     High  
cufflinks 17.49     High  
cufflinks 7.953       Low
cufflinks 20.595     High  
cufflinks 20.757     High  
cufflinks 7.273       Low

0 Strain