Gene : Medtr2g090480 M. truncatula Mt4.0v1
Defline:  (1 of 6) PTHR13935:SF53 - BASIC HELIX-LOOP-HELIX DOMAIN-CONTAINING PROTEIN Description:  helix loop helix DNA-binding domain protein
Genomic Order:  4883 Name:  ? Medtr2g090480
Secondary Identifier:  ? PAC:31067513
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g090480 0.5kb upstream 0.5kb upstream 2866 true chr2: 38605374-38608239 Medicago truncatula
Medtr2g090480 0.5kb upstream 0.5kb upstream 500 false chr2: 38605374-38605873 Medicago truncatula
Medtr2g090480 0.5kb downstream 0.5kb downstream 2866 true chr2: 38605874-38608739 Medicago truncatula
Medtr2g090480 0.5kb downstream 0.5kb downstream 500 false chr2: 38608240-38608739 Medicago truncatula
Medtr2g090480 1.0kb upstream 1.0kb upstream 3366 true chr2: 38604874-38608239 Medicago truncatula
Medtr2g090480 1.0kb upstream 1.0kb upstream 1000 false chr2: 38604874-38605873 Medicago truncatula
Medtr2g090480 1.0kb downstream 1.0kb downstream 3366 true chr2: 38605874-38609239 Medicago truncatula
Medtr2g090480 1.0kb downstream 1.0kb downstream 1000 false chr2: 38608240-38609239 Medicago truncatula
Medtr2g090480 2.0kb upstream 2.0kb upstream 4366 true chr2: 38603874-38608239 Medicago truncatula
Medtr2g090480 2.0kb upstream 2.0kb upstream 2000 false chr2: 38603874-38605873 Medicago truncatula
Medtr2g090480 2.0kb downstream 2.0kb downstream 4366 true chr2: 38605874-38610239 Medicago truncatula
Medtr2g090480 2.0kb downstream 2.0kb downstream 2000 false chr2: 38608240-38610239 Medicago truncatula
Medtr2g090480 5.0kb upstream 5.0kb upstream 7366 true chr2: 38600874-38608239 Medicago truncatula
Medtr2g090480 5.0kb upstream 5.0kb upstream 5000 false chr2: 38600874-38605873 Medicago truncatula
Medtr2g090480 5.0kb downstream 5.0kb downstream 7366 true chr2: 38605874-38613239 Medicago truncatula
Medtr2g090480 5.0kb downstream 5.0kb downstream 5000 false chr2: 38608240-38613239 Medicago truncatula
Medtr2g090480 10.0kb upstream 10.0kb upstream 12366 true chr2: 38595874-38608239 Medicago truncatula
Medtr2g090480 10.0kb upstream 10.0kb upstream 10000 false chr2: 38595874-38605873 Medicago truncatula
Medtr2g090480 10.0kb downstream 10.0kb downstream 12366 true chr2: 38605874-38618239 Medicago truncatula
Medtr2g090480 10.0kb downstream 10.0kb downstream 10000 false chr2: 38608240-38618239 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040931 5273 Angiosperm View MSA
122308200 5265 Fabidae View MSA
124070825 5270 Rosid View MSA
123745471 5271 Pentapetalae View MSA
122795033 5272 Eudicot View MSA
121309769 5274 Embryophyte View MSA
123347432 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.07        
cufflinks 0.006     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.01     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.077     Low  
cufflinks 0.023     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.059     Low  

0 Strain