Gene : Medtr2g090290 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR24015:SF644 - PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Description:  PPR containing plant protein
Genomic Order:  4856 Name:  ? Medtr2g090290
Secondary Identifier:  ? PAC:31068404
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g090290 0.5kb upstream 0.5kb upstream 3970 true chr2: 38387550-38391519 Medicago truncatula
Medtr2g090290 0.5kb upstream 0.5kb upstream 500 false chr2: 38387550-38388049 Medicago truncatula
Medtr2g090290 0.5kb downstream 0.5kb downstream 3970 true chr2: 38388050-38392019 Medicago truncatula
Medtr2g090290 0.5kb downstream 0.5kb downstream 500 false chr2: 38391520-38392019 Medicago truncatula
Medtr2g090290 1.0kb upstream 1.0kb upstream 4470 true chr2: 38387050-38391519 Medicago truncatula
Medtr2g090290 1.0kb upstream 1.0kb upstream 1000 false chr2: 38387050-38388049 Medicago truncatula
Medtr2g090290 1.0kb downstream 1.0kb downstream 4470 true chr2: 38388050-38392519 Medicago truncatula
Medtr2g090290 1.0kb downstream 1.0kb downstream 1000 false chr2: 38391520-38392519 Medicago truncatula
Medtr2g090290 2.0kb upstream 2.0kb upstream 5470 true chr2: 38386050-38391519 Medicago truncatula
Medtr2g090290 2.0kb upstream 2.0kb upstream 2000 false chr2: 38386050-38388049 Medicago truncatula
Medtr2g090290 2.0kb downstream 2.0kb downstream 5470 true chr2: 38388050-38393519 Medicago truncatula
Medtr2g090290 2.0kb downstream 2.0kb downstream 2000 false chr2: 38391520-38393519 Medicago truncatula
Medtr2g090290 5.0kb upstream 5.0kb upstream 8470 true chr2: 38383050-38391519 Medicago truncatula
Medtr2g090290 5.0kb upstream 5.0kb upstream 5000 false chr2: 38383050-38388049 Medicago truncatula
Medtr2g090290 5.0kb downstream 5.0kb downstream 8470 true chr2: 38388050-38396519 Medicago truncatula
Medtr2g090290 5.0kb downstream 5.0kb downstream 5000 false chr2: 38391520-38396519 Medicago truncatula
Medtr2g090290 10.0kb upstream 10.0kb upstream 13470 true chr2: 38378050-38391519 Medicago truncatula
Medtr2g090290 10.0kb upstream 10.0kb upstream 10000 false chr2: 38378050-38388049 Medicago truncatula
Medtr2g090290 10.0kb downstream 10.0kb downstream 13470 true chr2: 38388050-38401519 Medicago truncatula
Medtr2g090290 10.0kb downstream 10.0kb downstream 10000 false chr2: 38391520-38401519 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313688 5265 Fabidae View MSA
124071698 5270 Rosid View MSA
123743334 5271 Pentapetalae View MSA
122796848 5272 Eudicot View MSA
122049142 5273 Angiosperm View MSA
121311265 5274 Embryophyte View MSA
123348580 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.05        
cufflinks 3.811        
cufflinks 4.864       High
cufflinks 0.962       Low
cufflinks 5.661       High
cufflinks 1.298        
cufflinks 1.532        
cufflinks 4.166        
cufflinks 1.365        

0 Strain