Gene : Medtr2g080260 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR31656:SF5 - LATE EMBRYOGENESIS ABUNDANT-RELATED PROTEIN Description:  root cap/late embryogenesis related
Genomic Order:  4228 Name:  ? Medtr2g080260
Secondary Identifier:  ? PAC:31066394
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g080260 0.5kb upstream 0.5kb upstream 2370 true chr2: 33878075-33880444 Medicago truncatula
Medtr2g080260 0.5kb upstream 0.5kb upstream 500 false chr2: 33879945-33880444 Medicago truncatula
Medtr2g080260 0.5kb downstream 0.5kb downstream 2370 true chr2: 33877575-33879944 Medicago truncatula
Medtr2g080260 0.5kb downstream 0.5kb downstream 500 false chr2: 33877575-33878074 Medicago truncatula
Medtr2g080260 1.0kb upstream 1.0kb upstream 2870 true chr2: 33878075-33880944 Medicago truncatula
Medtr2g080260 1.0kb upstream 1.0kb upstream 1000 false chr2: 33879945-33880944 Medicago truncatula
Medtr2g080260 1.0kb downstream 1.0kb downstream 2870 true chr2: 33877075-33879944 Medicago truncatula
Medtr2g080260 1.0kb downstream 1.0kb downstream 1000 false chr2: 33877075-33878074 Medicago truncatula
Medtr2g080260 2.0kb upstream 2.0kb upstream 3870 true chr2: 33878075-33881944 Medicago truncatula
Medtr2g080260 2.0kb upstream 2.0kb upstream 2000 false chr2: 33879945-33881944 Medicago truncatula
Medtr2g080260 2.0kb downstream 2.0kb downstream 3870 true chr2: 33876075-33879944 Medicago truncatula
Medtr2g080260 2.0kb downstream 2.0kb downstream 2000 false chr2: 33876075-33878074 Medicago truncatula
Medtr2g080260 5.0kb upstream 5.0kb upstream 6870 true chr2: 33878075-33884944 Medicago truncatula
Medtr2g080260 5.0kb upstream 5.0kb upstream 5000 false chr2: 33879945-33884944 Medicago truncatula
Medtr2g080260 5.0kb downstream 5.0kb downstream 6870 true chr2: 33873075-33879944 Medicago truncatula
Medtr2g080260 5.0kb downstream 5.0kb downstream 5000 false chr2: 33873075-33878074 Medicago truncatula
Medtr2g080260 10.0kb upstream 10.0kb upstream 11870 true chr2: 33878075-33889944 Medicago truncatula
Medtr2g080260 10.0kb upstream 10.0kb upstream 10000 false chr2: 33879945-33889944 Medicago truncatula
Medtr2g080260 10.0kb downstream 10.0kb downstream 11870 true chr2: 33868075-33879944 Medicago truncatula
Medtr2g080260 10.0kb downstream 10.0kb downstream 10000 false chr2: 33868075-33878074 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311694 5265 Fabidae View MSA
124073376 5270 Rosid View MSA
123752203 5271 Pentapetalae View MSA
122797654 5272 Eudicot View MSA
122050447 5273 Angiosperm View MSA
121349873 5274 Embryophyte View MSA
123381481 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.132        
cufflinks 0.006     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 45.117     High  
cufflinks 0.011     Low Low
cufflinks 37.71     High  
cufflinks 45.98     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 20.143     High  

0 Strain