Gene : Medtr2g080980 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR33098:SF10 - T28P6.11 PROTEIN Description:  cotton fiber
Genomic Order:  4235 Name:  ? Medtr2g080980
Secondary Identifier:  ? PAC:31063517
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr2g080980 0.5kb upstream 0.5kb upstream 2138 true chr2: 33925526-33927663 Medicago truncatula
Medtr2g080980 0.5kb upstream 0.5kb upstream 500 false chr2: 33925526-33926025 Medicago truncatula
Medtr2g080980 0.5kb downstream 0.5kb downstream 2138 true chr2: 33926026-33928163 Medicago truncatula
Medtr2g080980 0.5kb downstream 0.5kb downstream 500 false chr2: 33927664-33928163 Medicago truncatula
Medtr2g080980 1.0kb upstream 1.0kb upstream 2638 true chr2: 33925026-33927663 Medicago truncatula
Medtr2g080980 1.0kb upstream 1.0kb upstream 1000 false chr2: 33925026-33926025 Medicago truncatula
Medtr2g080980 1.0kb downstream 1.0kb downstream 2638 true chr2: 33926026-33928663 Medicago truncatula
Medtr2g080980 1.0kb downstream 1.0kb downstream 1000 false chr2: 33927664-33928663 Medicago truncatula
Medtr2g080980 2.0kb upstream 2.0kb upstream 3638 true chr2: 33924026-33927663 Medicago truncatula
Medtr2g080980 2.0kb upstream 2.0kb upstream 2000 false chr2: 33924026-33926025 Medicago truncatula
Medtr2g080980 2.0kb downstream 2.0kb downstream 3638 true chr2: 33926026-33929663 Medicago truncatula
Medtr2g080980 2.0kb downstream 2.0kb downstream 2000 false chr2: 33927664-33929663 Medicago truncatula
Medtr2g080980 5.0kb upstream 5.0kb upstream 6638 true chr2: 33921026-33927663 Medicago truncatula
Medtr2g080980 5.0kb upstream 5.0kb upstream 5000 false chr2: 33921026-33926025 Medicago truncatula
Medtr2g080980 5.0kb downstream 5.0kb downstream 6638 true chr2: 33926026-33932663 Medicago truncatula
Medtr2g080980 5.0kb downstream 5.0kb downstream 5000 false chr2: 33927664-33932663 Medicago truncatula
Medtr2g080980 10.0kb upstream 10.0kb upstream 11638 true chr2: 33916026-33927663 Medicago truncatula
Medtr2g080980 10.0kb upstream 10.0kb upstream 10000 false chr2: 33916026-33926025 Medicago truncatula
Medtr2g080980 10.0kb downstream 10.0kb downstream 11638 true chr2: 33926026-33937663 Medicago truncatula
Medtr2g080980 10.0kb downstream 10.0kb downstream 10000 false chr2: 33927664-33937663 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308773 5265 Fabidae View MSA
124070091 5270 Rosid View MSA
123750199 5271 Pentapetalae View MSA
122796107 5272 Eudicot View MSA
122050129 5273 Angiosperm View MSA
121311757 5274 Embryophyte View MSA
123349012 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.936     High  
cufflinks 30.339     High  
cufflinks 10.418     High Low
cufflinks 55.503     High High
cufflinks 8.813       Low
cufflinks 24.914     High  
cufflinks 26.918     High  
cufflinks 18.702     High  
cufflinks 84.162     High High

0 Strain